Complete Genome Sequences of Grapevine Yellow Speckle Viroid 1 and Hop Stunt Viroid Assembled from the Transcriptome of Ixeridium dentatum Plants

Joong-Hwan Lee; Seungmo Lim; Seung-Won Lee; Ran Hee Yoo; Davaajargal Igori; Fumei Zhao; Youngnam Yoon; Su-Heon Lee; Jae Sun Moon

doi:10.1128/genomeA.01248-15

Complete Genome Sequences of Grapevine Yellow Speckle Viroid 1 and Hop Stunt Viroid Assembled from the Transcriptome of Ixeridium dentatum Plants

Genome Announc. 2015 Oct 29;3(5):e01248-15. doi: 10.1128/genomeA.01248-15.

Authors

Joong-Hwan Lee¹, Seungmo Lim², Seung-Won Lee³, Ran Hee Yoo², Davaajargal Igori², Fumei Zhao², Youngnam Yoon⁴, Su-Heon Lee⁵, Jae Sun Moon⁶

Affiliations

¹ Institute for Bioresources Research, Gyeongsangbuk-do Agricultural Research & Extension Services, Andong, Republic of Korea.
² Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea Biosystems and Bioengineering Program, University of Science and Technology, Daejeon, Republic of Korea.
³ Bioinformatics Team & Research Institute, SeqGenesis, Daejeon, Republic of Korea School of Applied Biosciences, Kyungpook National University, Daegu, Republic of Korea.
⁴ Crop Production Technology Research Division, NICS, RDA, Miryang, Republic of Korea.
⁵ School of Applied Biosciences, Kyungpook National University, Daegu, Republic of Korea Institute of Plant Medicine, Kyungpook National University, Daegu, Republic of Korea.
⁶ Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea Biosystems and Bioengineering Program, University of Science and Technology, Daejeon, Republic of Korea [email protected].

Abstract

Here, we report complete genome sequences of grapevine yellow speckle viroid 1 (GYSVd1) and hop stunt viroid (HSVd), members of the family Pospiviroidae, assembled from the transcriptome data generated from Ixeridium dentatum plants. To our knowledge, this is the first report of GYSVd1 and HSVd in I. dentatum.