Structure of a TCR-Mimic Antibody with Target Predicts Pharmacogenetics

J Mol Biol. 2016 Jan 16;428(1):194-205. doi: 10.1016/j.jmb.2015.12.002. Epub 2015 Dec 11.

Abstract

Antibody therapies currently target only extracellular antigens. A strategy to recognize intracellular antigens is to target peptides presented by immune HLA receptors. ESK1 is a human, T-cell receptor (TCR)-mimic antibody that binds with subnanomolar affinity to the RMF peptide from the intracellular Wilms tumor oncoprotein WT1 in complex with HLA-A*02:01. ESK1 is therapeutically effective in mouse models of WT1(+) human cancers. TCR-based therapies have been presumed to be restricted to one HLA subtype. The mechanism for the specificity and high affinity of ESK1 is unknown. We show in a crystal structure that ESK1 Fab binds to RMF/HLA-A*02:01 in a mode different from that of TCRs. From the structure, we predict and then experimentally confirm high-affinity binding with multiple other HLA-A*02 subtypes, broadening the potential patient pool for ESK1 therapy. Using the crystal structure, we also predict potential off-target binding that we experimentally confirm. Our results demonstrate how protein structure information can contribute to personalized immunotherapy.

Keywords: MHC; antibodies; cancer; immunotherapy.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Antibodies / chemistry
  • Antibodies / metabolism*
  • Antineoplastic Agents / chemistry
  • Antineoplastic Agents / metabolism*
  • Crystallography, X-Ray
  • HLA-A2 Antigen / chemistry
  • HLA-A2 Antigen / genetics*
  • HLA-A2 Antigen / metabolism*
  • Humans
  • Mice
  • Models, Molecular
  • Pharmacogenetics
  • Protein Binding
  • Protein Conformation
  • WT1 Proteins / chemistry
  • WT1 Proteins / metabolism*

Substances

  • Antibodies
  • Antineoplastic Agents
  • HLA-A*02 antigen
  • HLA-A2 Antigen
  • WT1 Proteins
  • WT1 protein, human

Associated data

  • PDB/4WUU