Extreme dNTP pool changes and hypermutability in dcd ndk strains

Mutat Res. 2016 Feb-Mar:784-785:16-24. doi: 10.1016/j.mrfmmm.2015.12.004. Epub 2015 Dec 29.

Abstract

Cells lacking deoxycytidine deaminase (DCD) have been shown to have imbalances in the normal dNTP pools that lead to multiple phenotypes, including increased mutagenesis, increased sensitivity to oxidizing agents, and to a number of antibiotics. In particular, there is an increased dCTP pool, often accompanied by a decreased dTTP pool. In the work presented here, we show that double mutants of Escherichia coli lacking both DCD and NDK (nucleoside diphosphate kinase) have even more extreme imbalances of dNTPs than mutants lacking only one or the other of these enzymes. In particular, the dCTP pool rises to very high levels, exceeding even the cellular ATP level by several-fold. This increased level of dCTP, coupled with more modest changes in other dNTPs, results in exceptionally high mutation levels. The high mutation levels are attenuated by the addition of thymidine. The results corroborate the critical importance of controlling DNA precursor levels for promoting genome stability. We also show that the addition of certain exogenous nucleosides can influence replication errors in DCD-proficient strains that are deficient in mismatch repair.

Keywords: Hypermutability; dNTP pools; dcd ndk mutant.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, N.I.H., Intramural

MeSH terms

  • Cytidine Deaminase / genetics*
  • Cytidine Deaminase / metabolism
  • DNA-Directed RNA Polymerases
  • Deoxyribonucleotides / genetics
  • Deoxyribonucleotides / metabolism
  • Escherichia coli / drug effects
  • Escherichia coli / genetics*
  • Escherichia coli / metabolism
  • Escherichia coli Proteins / genetics
  • Escherichia coli Proteins / metabolism
  • Mutation Rate
  • Mutation*
  • Nucleoside-Diphosphate Kinase / genetics*
  • Nucleoside-Diphosphate Kinase / metabolism
  • Thymidine / pharmacology

Substances

  • Deoxyribonucleotides
  • Escherichia coli Proteins
  • rpoB protein, E coli
  • Nucleoside-Diphosphate Kinase
  • DNA-Directed RNA Polymerases
  • Cytidine Deaminase
  • deoxycytidine deaminase
  • Thymidine