Predicting skin sensitisation using a decision tree integrated testing strategy with an in silico model and in chemico/in vitro assays

Regul Toxicol Pharmacol. 2016 Apr:76:30-8. doi: 10.1016/j.yrtph.2016.01.009. Epub 2016 Jan 18.

Abstract

There is a pressing need for non-animal methods to predict skin sensitisation potential and a number of in chemico and in vitro assays have been designed with this in mind. However, some compounds can fall outside the applicability domain of these in chemico/in vitro assays and may not be predicted accurately. Rule-based in silico models such as Derek Nexus are expert-derived from animal and/or human data and the mechanism-based alert domain can take a number of factors into account (e.g. abiotic/biotic activation). Therefore, Derek Nexus may be able to predict for compounds outside the applicability domain of in chemico/in vitro assays. To this end, an integrated testing strategy (ITS) decision tree using Derek Nexus and a maximum of two assays (from DPRA, KeratinoSens, LuSens, h-CLAT and U-SENS) was developed. Generally, the decision tree improved upon other ITS evaluated in this study with positive and negative predictivity calculated as 86% and 81%, respectively. Our results demonstrate that an ITS using an in silico model such as Derek Nexus with a maximum of two in chemico/in vitro assays can predict the sensitising potential of a number of chemicals, including those outside the applicability domain of existing non-animal assays.

Keywords: DPRA; Derek Nexus; In silico assessment; Integrated testing strategy; KeratinoSens; LuSens; Skin sensitisation; U-SENS; h-CLAT.

MeSH terms

  • Animal Testing Alternatives*
  • Animals
  • Computer Simulation*
  • Databases, Factual
  • Decision Trees*
  • Dermatitis, Allergic Contact / etiology*
  • Dermatitis, Irritant / etiology*
  • Humans
  • Irritants / chemistry
  • Irritants / toxicity*
  • Knowledge Bases
  • Reproducibility of Results
  • Skin / drug effects*
  • Skin Irritancy Tests / methods*
  • Software
  • Structure-Activity Relationship
  • Workflow

Substances

  • Irritants