VisBOL: Web-Based Tools for Synthetic Biology Design Visualization

ACS Synth Biol. 2016 Aug 19;5(8):874-6. doi: 10.1021/acssynbio.5b00244. Epub 2016 Feb 9.

Abstract

VisBOL is a Web-based application that allows the rendering of genetic circuit designs, enabling synthetic biologists to visually convey designs in SBOL visual format. VisBOL designs can be exported to formats including PNG and SVG images to be embedded in Web pages, presentations and publications. The VisBOL tool enables the automated generation of visualizations from designs specified using the Synthetic Biology Open Language (SBOL) version 2.0, as well as a range of well-known bioinformatics formats including GenBank and Pigeoncad notation. VisBOL is provided both as a user accessible Web site and as an open-source (BSD) JavaScript library that can be used to embed diagrams within other content and software.

Keywords: SBOL Visual; Synthetic Biology Open Language; genetic circuits; synthetic biology; visualization.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Computational Biology / methods
  • Databases, Nucleic Acid
  • Humans
  • Internet
  • Programming Languages
  • Software
  • Synthetic Biology / methods*