Branch-PCR Constructed Stable shRNA Transcription Nanoparticles Have Long-Lasting RNAi Effect

Chembiochem. 2016 Jun 2;17(11):1038-42. doi: 10.1002/cbic.201600047. Epub 2016 Apr 21.

Abstract

RNA interference (RNAi) is a cellular process for gene silencing. Because of poor serum stability, transferring dsRNA directly into the target cells is a challenge. We report a facile and universal strategy to construct short hairpin RNA (shRNA) transcription nanoparticles with multiple shRNA transcription templates by PCR with flexible branched primers (branch-PCR). Compared with conventional linear shRNA transcription templates, these shRNA transcription nanoparticles show excellent stability against digestion by exonuclease III. Importantly, we found that our highly stable shRNA transcription nanoparticles can also be transcribed and thus induce efficient and long-lasting RNAi with picomolar activity in living mammalian cells. These chemically well-defined branch-PCR-generated stable shRNA transcription nanoparticles might facilitate RNAi delivery with a long-lasting RNAi effects.

Keywords: DNA structures; gene silencing; polymerase chain reaction; shRNA; transcription nanoparticles.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • DNA Primers / chemistry
  • DNA Primers / metabolism
  • Exodeoxyribonucleases / metabolism
  • Genes, Reporter
  • Green Fluorescent Proteins / antagonists & inhibitors
  • Green Fluorescent Proteins / genetics
  • Green Fluorescent Proteins / metabolism
  • HEK293 Cells
  • Humans
  • Microscopy, Atomic Force
  • Microscopy, Confocal
  • Nanoparticles / chemistry*
  • Polymerase Chain Reaction
  • RNA Interference*
  • RNA, Small Interfering / chemistry
  • RNA, Small Interfering / metabolism*

Substances

  • DNA Primers
  • RNA, Small Interfering
  • enhanced green fluorescent protein
  • Green Fluorescent Proteins
  • Exodeoxyribonucleases
  • exodeoxyribonuclease III