Highlights from the 11th ISCB Student Council Symposium 2015. Dublin, Ireland. 10 July 2015

Katie Wilkins; Mehedi Hassan; Margherita Francescatto; Jakob Jespersen; R. Gonzalo Parra; Bart Cuypers; Dan DeBlasio; Alexander Junge; Anupama Jigisha; Farzana Rahman; Griet Laenen; Sander Willems; Lieven Thorrez; Yves Moreau; Nagarajan Raju; Sonia Pankaj Chothani; C. Ramakrishnan; Masakazu Sekijima; M. Michael Gromiha; Paddy J Slator; Nigel J Burroughs; Przemysław Szałaj; Zhonghui Tang; Paul Michalski; Oskar Luo; Xingwang Li; Yijun Ruan; Dariusz Plewczynski; Giulia Fiscon; Emanuel Weitschek; Massimo Ciccozzi; Paola Bertolazzi; Giovanni Felici; Bart Cuypers; Pieter Meysman; Manu Vanaerschot; Maya Berg; Hideo Imamura; Jean-Claude Dujardin; Kris Laukens; Westa Domanova; James R. Krycer; Rima Chaudhuri; Pengyi Yang; Fatemeh Vafaee; Daniel J. Fazakerley; Sean J. Humphrey; David E. James; Zdenka Kuncic

doi:10.1186/s12859-016-0901-4

Highlights from the 11th ISCB Student Council Symposium 2015. Dublin, Ireland. 10 July 2015

BMC Bioinformatics. 2016 Feb 25;17 Suppl 3(Suppl 3):95. doi: 10.1186/s12859-016-0901-4.

Authors

Katie Wilkins^#^{1

2}, Mehedi Hassan³, Margherita Francescatto⁴, Jakob Jespersen^{5

6}, R. Gonzalo Parra⁷, Bart Cuypers^{8

9}, Dan DeBlasio¹⁰, Alexander Junge¹¹, Anupama Jigisha¹², Farzana Rahman^#³, Griet Laenen^{13

14}, Sander Willems¹⁵, Lieven Thorrez¹⁶, Yves Moreau^{13

14}, Nagarajan Raju¹⁷, Sonia Pankaj Chothani^{17

18}, C. Ramakrishnan¹⁷, Masakazu Sekijima¹⁹, M. Michael Gromiha¹⁷, Paddy J Slator^{20

21}, Nigel J Burroughs²⁰, Przemysław Szałaj^{22

23}, Zhonghui Tang²⁴, Paul Michalski²⁴, Oskar Luo²⁴, Xingwang Li²⁴, Yijun Ruan^{24

25}, Dariusz Plewczynski²⁶, Giulia Fiscon^{27

28}, Emanuel Weitschek^{28

29}, Massimo Ciccozzi³⁰, Paola Bertolazzi²⁸, Giovanni Felici²⁸, Bart Cuypers^{31

32

33}, Pieter Meysman^{31

32}, Manu Vanaerschot^{33

34}, Maya Berg³³, Hideo Imamura³³, Jean-Claude Dujardin^#^{33

35}, Kris Laukens^#^{31

32}, Westa Domanova^#^{36

37}, James R. Krycer^#^{36

38}, Rima Chaudhuri^{36

38}, Pengyi Yang³⁹, Fatemeh Vafaee^{36

40}, Daniel J. Fazakerley^{36

38}, Sean J. Humphrey⁴¹, David E. James^{36

38

42}, Zdenka Kuncic^{36

37}

Affiliations

¹ Plant Pathology and Plant-Microbe Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, NY USA
² Graduate Field of Computational Biology, Cornell University, Ithaca, NY USA
³ School of Computing & Mathematics, University of South Wales, Cardiff, UK
⁴ Department of Genome Biology for Neurodegenerative Diseases, German Center for Neurodegenerative Diseases (DZNE) within the Helmholtz Association, ᅟ, Germany
⁵ Department of Surgery, Massachusetts General Hospital, The Broad Institute of MIT and Harvard, Boston, USA
⁶ Department of Systems Biology, Technical University of Denmark, Kemitorvet, Denmark
⁷ Protein Physiology Lab, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires, Argentina
⁸ Molecular Parasitology Unit (MPU), Institute of Tropical Medicine, Nationalestraat 155, 2000 Antwerp, Belgium
⁹ Advanced Database Research and Modeling (ADReM) research group, University of Antwerp, Middelheimlaan 1, 2020 Antwerpen, Belgium
¹⁰ Department of Computer Science, University of Arizona, Tucson, AZ 84721 USA
¹¹ Department of Veterinary Clinical and Animal Sciences, Center for non-coding RNA in Technology and Health, University of Copenhagen, Copenhagen, Denmark
¹² University College Dublin, Dublin, Ireland
¹³ Department of Electrical Engineering (ESAT), STADIUS Center for Dynamical Systems, Signal Processing and Data Analytics, KU Leuven, Leuven, Belgium
¹⁴ iMinds Medical IT Department, Leuven, Belgium
¹⁵ Scientific Institute of Public Health (WIV-ISP), Platform of Biotechnology and Molecular Biology (PBB), Brussels, Belgium
¹⁶ Department of Development and Regeneration @ Kulak, KU Leuven, Kortrijk, Belgium
¹⁷ Department of Biotechnology, Bhupat and Jyoti Metha School of Biosciences, Indian Institute of Technology Madras, Chennai, 600036 Tamilnadu India
¹⁸ Philips Research North America, 345 Scarborough Road, Briarcliff Manor, NY 10510 USA
¹⁹ Global Scientific Information and Computing Center (GSIC), Tokyo Institute of Technology, 2-12-1 Ookayama, Meguro-ku, Tokyo, 152-8550 Japan
²⁰ Systems Biology Centre, University of Warwick, Senate House, Coventry, UK
²¹ Systems Biology Doctoral Training Centre, University of Warwick, Senate House, Coventry, UK
²² Center for Bioinformatics and Data Analysis, Medical University of Bialystok, ᅟ, Poland
²³ I-BioStat, Hasselt University, ᅟ, Belgium
²⁴ The Jackson Laboratory for Genomic Medicine, Farmington, USA
²⁵ Department of Genetics and Genome Sciences, UConn Health, ᅟ, USA
²⁶ Centre of New Technologies, Warsaw University, ᅟ, Poland
²⁷ Department of Computer, Control and Management Engineering, Sapienza University, 00185 Rome, Italy
²⁸ Institute for Systems Analysis and Computer Science, National Research Council, 00185 Rome, Italy
²⁹ Department of Engineering, International University UNINETTUNO, 00186 Rome, Italy
³⁰ Istituto Superiore di Sanità, 00161 Rome, Italy
³¹ Advanced Database Research and Modeling (ADReM), University of Antwerp, Antwerp, Belgium
³² Biomedical informatics research center Antwerp (biomina), Antwerp, Belgium
³³ Molecular Parasitology Unit, Department of Biomedical Sciences, Institute of Tropical Medicine, Antwerp, Belgium
³⁴ Department of Microbiology and Immunology, Columbia University Medical Center, New York, NY USA
³⁵ Department of Biomedical Sciences, University of Antwerp, Antwerp, Belgium
³⁶ Charles Perkins Centre, The University of Sydney, ᅟ, NSW 2006 Australia
³⁷ School of Physics, The University of Sydney, Sydney, NSW 2006 Australia
³⁸ School of Molecular Bioscience, The University of Sydney, ᅟ, NSW 2006 Australia
³⁹ NIH/NIEHS, ᅟ, NC 27709 USA
⁴⁰ School of Mathematics and Statistics, The University of Sydney, ᅟ, NSW 2006 Australia
⁴¹ Department of Proteomics and Signal Transduction, Max Planck Institute for Biochemistry, Martinsried, 82152 Germany
⁴² Sydney Medical School, The University of Sydney, ᅟ, NSW 2006 Australia

^# Contributed equally.

Abstract

A1 Highlights from the eleventh ISCB Student Council Symposium 2015

Katie Wilkins, Mehedi Hassan, Margherita Francescatto, Jakob Jespersen, R. Gonzalo Parra, Bart Cuypers, Dan DeBlasio, Alexander Junge, Anupama Jigisha, Farzana Rahman

O1 Prioritizing a drug’s targets using both gene expression and structural similarity

Griet Laenen, Sander Willems, Lieven Thorrez, Yves Moreau

O2 Organism specific protein-RNA recognition: A computational analysis of protein-RNA complex structures from different organisms

Nagarajan Raju, Sonia Pankaj Chothani, C. Ramakrishnan, Masakazu Sekijima; M. Michael Gromiha

O3 Detection of Heterogeneity in Single Particle Tracking Trajectories

Paddy J Slator, Nigel J Burroughs

O4 3D-NOME: 3D NucleOme Multiscale Engine for data-driven modeling of three-dimensional genome architecture

Przemysław Szałaj, Zhonghui Tang, Paul Michalski, Oskar Luo, Xingwang Li, Yijun Ruan, Dariusz Plewczynski

O5 A novel feature selection method to extract multiple adjacent solutions for viral genomic sequences classification

Giulia Fiscon, Emanuel Weitschek, Massimo Ciccozzi, Paola Bertolazzi, Giovanni Felici

O6 A Systems Biology Compendium for Leishmania donovani

Bart Cuypers, Pieter Meysman, Manu Vanaerschot, Maya Berg, Hideo Imamura, Jean-Claude Dujardin, Kris Laukens

O7 Unravelling signal coordination from large scale phosphorylation kinetic data

Westa Domanova, James R. Krycer, Rima Chaudhuri, Pengyi Yang, Fatemeh Vafaee, Daniel J. Fazakerley, Sean J. Humphrey, David E. James, Zdenka Kuncic