Defining Viral Defective Ribosomal Products: Standard and Alternative Translation Initiation Events Generate a Common Peptide from Influenza A Virus M2 and M1 mRNAs

J Immunol. 2016 May 1;196(9):3608-17. doi: 10.4049/jimmunol.1502303. Epub 2016 Mar 25.

Abstract

Influenza A virus gene segment 7 encodes two proteins: the M1 protein translated from unspliced mRNA and the M2 protein produced by mRNA splicing and largely encoded by the M1 +1 reading frame. To better understand the generation of defective ribosomal products relevant to MHC class I Ag presentation, we engineered influenza A virus gene segment 7 to encode the model H-2 K(b) class I peptide ligand SIINFEKL at the M2 protein C terminus. Remarkably, after treating virus-infected cells with the RNA splicing inhibitor spliceostatin A to prevent M2 mRNA generation, K(b)-SIINFEKL complexes were still presented on the cell surface at levels ≤60% of untreated cells. Three key findings indicate that SIINFEKL is produced by cytoplasmic translation of unspliced M1 mRNA initiating at CUG codons within the +1 reading frame: 1) synonymous mutation of CUG codons in the M2-reading frame reduced K(b)-SIINFEKL generation; 2) K(b)-SIINFEKL generation was not affected by drug-mediated inhibition of AUG-initiated M1 synthesis; and 3) K(b)-SIINFEKL was generated in vitro and in vivo from mRNA synthesized in the cytoplasm by vaccinia virus, and hence cannot be spliced. These findings define a viral defective ribosomal product generated by cytoplasmic noncanonical translation and demonstrate the participation of CUG-codon-based translation initiation in pathogen immunosurveillance.

Publication types

  • Research Support, N.I.H., Intramural

MeSH terms

  • Animals
  • Antigen Presentation / drug effects
  • Cell Line
  • Defective Viruses / chemistry
  • Defective Viruses / drug effects
  • Defective Viruses / genetics*
  • Defective Viruses / metabolism
  • Genes, MHC Class I
  • HeLa Cells
  • Humans
  • Influenza A virus / chemistry
  • Influenza A virus / drug effects
  • Influenza A virus / genetics*
  • Influenza A virus / metabolism
  • Mice
  • Mice, Inbred C57BL
  • Peptides / chemistry
  • Peptides / genetics*
  • Protein Biosynthesis
  • Pyrans / pharmacology
  • RNA Splicing / drug effects
  • Ribosomes / metabolism*
  • Spiro Compounds / pharmacology
  • Viral Matrix Proteins / genetics*

Substances

  • M1 protein, Influenza A virus
  • M2 protein, Influenza A virus
  • Peptides
  • Pyrans
  • Spiro Compounds
  • Viral Matrix Proteins
  • spliceostatin A