Reverse transcription loop-mediated isothermal amplification (RT-LAMP) assay for rapid diagnosis of chilli veinal mottle virus

Arch Virol. 2016 Jul;161(7):1957-61. doi: 10.1007/s00705-016-2850-7. Epub 2016 Apr 11.

Abstract

Chilli veinal mottle virus (ChiVMV) causes significant economic loss to chilli cultivation in northeastern India, as well as in eastern Asia. In this study, we have developed a single-tube one-step reverse transcription loop-mediated isothermal amplification (RT-LAMP) assay for rapid, sensitive and specific diagnosis of ChiVMV. Amplification could be visualized after adding SYBR Green I (1000×) dye within 60 min under isothermal conditions at 63 °C, with a set of four primers designed based on the large nuclear inclusion protein (NIb) domain of ChiVMV (isolate KC-ML1). The RT-LAMP method was 100 times more sensitive than one-step reverse transcription polymerase chain reaction (RT-PCR), with a detection limit of 0.0001 ng of total RNA per reaction.

Publication types

  • Evaluation Study

MeSH terms

  • Capsicum / virology*
  • DNA Primers / genetics
  • Nucleic Acid Amplification Techniques / methods*
  • Plant Diseases / virology*
  • Potyvirus / classification
  • Potyvirus / genetics
  • Potyvirus / immunology*
  • Potyvirus / isolation & purification*
  • Reverse Transcription
  • Sensitivity and Specificity
  • Viral Proteins / genetics

Substances

  • DNA Primers
  • Viral Proteins