Three DNA fragments from the genome of the rickettsia-like organism (RLO) symbiotic in tsetse flies (Glossina spp.) have been cloned. One of these fragments represents a family of highly conserved repeats, which occurs in RLO from all species of tsetse examined and has been amplified in the original RLO culture from which the DNA is cloned. This fragment serves as a highly sensitive and specific probe for the detection of RLO in tsetse midguts. As few as 30 organisms were unequivocally identified by dot blot hybridization of homogenized midgut preparations. Since the presence of RLO within tsetse midguts is associated with susceptibility to trypanosome infection, this technique provides a rapid and reliable method of assessing the potential susceptibility of a tsetse population to Trypanosoma brucei s.l. and T. congolense infections.