Reproducible pharmacogenomic profiling of cancer cell line panels

Nature. 2016 May 19;533(7603):333-7. doi: 10.1038/nature17987.

Abstract

The use of large-scale genomic and drug response screening of cancer cell lines depends crucially on the reproducibility of results. Here we consider two previously published screens, plus a later critique of these studies. Using independent data, we show that consistency is achievable, and provide a systematic description of the best laboratory and analysis practices for future studies.

MeSH terms

  • Antineoplastic Agents / pharmacology*
  • Cell Line, Tumor
  • Cell Survival / drug effects
  • Drug Screening Assays, Antitumor / methods*
  • Drug Screening Assays, Antitumor / standards*
  • Genetic Markers / genetics
  • Genome, Human / genetics
  • Humans
  • Neoplasms / genetics*
  • Neoplasms / pathology*
  • Quality Control
  • Reproducibility of Results

Substances

  • Antineoplastic Agents
  • Genetic Markers