Anaerobic methane oxidation coupled to nitrite reduction can be a potential methane sink in coastal environments

Appl Microbiol Biotechnol. 2016 Aug;100(16):7171-80. doi: 10.1007/s00253-016-7627-0. Epub 2016 May 25.

Abstract

In the current study, we investigated nitrite-dependent anaerobic methane oxidation (N-DAMO) as a potential methane sink in the Hangzhou Bay and the adjacent Zhoushan sea area. The potential activity of the N-DAMO process was primarily observed in Hangzhou Bay by means of (13)C-labeling experiments, whereas very low or no potential N-DAMO activity could be detected in the Zhoushan sea area. The measured potential N-DAMO rates ranged from 0.2 to 1.3 nmol (13)CO2 g(-1) (dry sediment) day(-1), and the N-DAMO potentially contributed 2.0-9.4 % to the total microbial methane oxidation in the examined sediments. This indicated that the N-DAMO process may be an alternative pathway in the coastal methane cycle. Phylogenetic analyses confirmed the presence of Candidatus Methylomirabilis oxyfera-like bacteria in all the examined sediments, while the group A members (the dominant bacteria responsible for N-DAMO) were found mainly in Hangzhou Bay. Quantitative PCR showed that the 16S rRNA gene abundance of Candidatus M. oxyfera-like bacteria varied from 5.4 × 10(6) to 5.0 × 10(7) copies g(-1) (dry sediment), with a higher abundance observed in Hangzhou Bay. In addition, the overlying water NO3 (-) concentration and salinity were identified as the most important factors influencing the abundance and potential activity of Candidatus M. oxyfera-like bacteria in the examined sediments. This study showed the evidence of N-DAMO in coastal environments and indicated the importance of N-DAMO as a potential methane sink in coastal environments.

Keywords: Anthropogenic nitrogen pollution; Coastal environments; Hangzhou Bay; N-DAMO; Potential methane sink.

MeSH terms

  • Anaerobiosis
  • Bacteria / metabolism*
  • Base Sequence
  • Bays / microbiology*
  • DNA, Bacterial / genetics
  • Geologic Sediments / microbiology*
  • Isotope Labeling
  • Methane / metabolism*
  • Nitrates / chemistry*
  • Nitrites / chemistry*
  • Oxidation-Reduction
  • Phylogeny
  • RNA, Ribosomal, 16S / genetics
  • Salinity
  • Sequence Analysis, DNA
  • Soil Microbiology

Substances

  • DNA, Bacterial
  • Nitrates
  • Nitrites
  • RNA, Ribosomal, 16S
  • Methane