Kinetics of the Antibody Recognition Site in the Third IgG-Binding Domain of Protein G

Angew Chem Int Ed Engl. 2016 Aug 8;55(33):9567-70. doi: 10.1002/anie.201603501. Epub 2016 Jun 27.

Abstract

Protein dynamics occurring on a wide range of timescales play a crucial role in governing protein function. Particularly, motions between the globular rotational correlation time (τc ) and 40 μs (supra-τc window), strongly influence molecular recognition. This supra-τc window was previously hidden, owing to a lack of experimental methods. Recently, we have developed a high-power relaxation dispersion (RD) experiment for measuring kinetics as fast as 4 μs. For the first time, this method, performed under super-cooled conditions, enabled us to detect a global motion in the first β-turn of the third IgG-binding domain of protein G (GB3), which was extrapolated to 371±115 ns at 310 K. Furthermore, the same residues show the plasticity in the model-free residual dipolar coupling (RDC) order parameters and in an ensemble encoding the supra-τc dynamics. This β-turn is involved in antibody binding, exhibiting the potential link of the observed supra-τc motion with molecular recognition.

Keywords: NMR spectroscopy; kinetics; protein dynamics; relaxation dispersion.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Immunoglobulin G / chemistry*
  • Kinetics
  • Models, Molecular
  • Protein Binding
  • Protein Interaction Domains and Motifs

Substances

  • Immunoglobulin G