Molecular characterization of blaESBL-producing Escherichia coli cultured from pig farms in Ireland

J Antimicrob Chemother. 2016 Nov;71(11):3062-3065. doi: 10.1093/jac/dkw278. Epub 2016 Jul 25.

Abstract

Objectives: To characterize ESBL-encoding Escherichia coli cultured from pigs and their plasmids carrying these genes following conjugation into recipient strains.

Methods: Six ESBL-producing E. coli were recovered from faecal samples taken from pigs along with a further isolate from the environment of a farrowing house on three pig farms in Ireland. These isolates were characterized by phylogenetic grouping, MLST and ESBL genotype analyses. Conjugation experiments were carried out in broth mating assays. S1-nuclease PFGE was used to determine the plasmid profiles. Whole-genome sequences of the seven E. coli were determined and subsequently analysed.

Results: Phylogenetic groups and the corresponding MLST STs identified among the seven tested E. coli isolates included A/ST10, A/ST34, C/ST23 and C/ST1629. All seven isolates carried one or more high-molecular-weight plasmids and demonstrated the ability to transfer their cefotaxime resistance phenotype at high frequencies. Five transmissible plasmid replicon types were detected, including IncK/B (n = 3), IncI1 (n = 2), IncFIA (n = 1), IncFIB (n = 1) and IncN (n = 1). ESBL-encoding genes, including blaCTX-M-14, blaCTX-M-15 and blaTEM-20, were identified.

Conclusions: As the first report from pig sources in Ireland, characterization of these ESBL-encoding isolates and their transmissible plasmids extends our understanding on these resistance markers from porcine E. coli.

MeSH terms

  • Animals
  • Cluster Analysis
  • Conjugation, Genetic
  • Environmental Microbiology
  • Escherichia coli / classification
  • Escherichia coli / enzymology*
  • Escherichia coli / genetics
  • Escherichia coli / isolation & purification
  • Escherichia coli Infections / microbiology
  • Escherichia coli Infections / veterinary*
  • Farms
  • Feces / microbiology
  • Genetic Variation
  • Ireland
  • Molecular Typing
  • Phylogeny
  • Plasmids / analysis
  • Sequence Analysis, DNA
  • Swine / microbiology*
  • beta-Lactamases / metabolism*

Substances

  • beta-Lactamases