Reducing antibiotic resistance genes, integrons, and pathogens in dairy manure by continuous thermophilic composting

Bioresour Technol. 2016 Nov:220:425-432. doi: 10.1016/j.biortech.2016.08.101. Epub 2016 Aug 31.

Abstract

This study explored the effects of composting using three temperature regimes, namely, insufficient thermophilic composting (ITC), normal thermophilic composting (NTC), and continuous thermophilic composting (CTC), on antibiotic resistance genes (ARGs), integrons, and human pathogenic bacteria (HPB), as well as the mechanisms involved. The NTC and CTC treatments led to greater decreases in 5/10 ARGs and two integrons than ITC, and the abundances of ARGs (tetC, tetG, and tetQ) and int1 only declined in the NTC and CTC treatments. The abundances of HPB decreased by 82.8%, 76.9%, and 96.9% under ITC, NTC, CTC, respectively. Redundancy analysis showed that both bacterial succession and horizontal gene transfer play important roles in the variation of ARGs, and the changes in different ARGs were due to diverse mechanisms. CTC performed significantly better at reducing ARGs, integrons, and HPB, thus it may be used to manage the public health risks of ARGs in animal manure.

Keywords: Antibiotic resistance gene; Bacterial community; Composting; Horizontal gene transfer; Temperature.

MeSH terms

  • Animals
  • Anti-Bacterial Agents / pharmacology
  • Biodegradation, Environmental
  • Drug Resistance, Microbial / genetics*
  • Genes, Bacterial*
  • Integrons*
  • Manure / microbiology*
  • Nucleic Acid Denaturation
  • Sequence Analysis, DNA
  • Soil Microbiology*
  • Temperature

Substances

  • Anti-Bacterial Agents
  • Manure