Identification of fused bicyclic derivatives of pyrrolidine and imidazolidinone as dengue virus-2 NS2B-NS3 protease inhibitors

Eur J Med Chem. 2017 Jan 5:125:751-759. doi: 10.1016/j.ejmech.2016.09.063. Epub 2016 Sep 21.

Abstract

A series of fused ring derivatives of pyrrolidine and imidazolidinone were designed, synthesized, characterized and assayed against the DENV-2 NS2B-NS3 protease and wild-type DENV-2 virus. The linear dipeptide compound 1 and the non-peptidic fused ring compound 2 show comparable activities against DENV-2 NS2B-NS3 protease and wild-type DENV-2 virus in a viral replication assay. The preliminary SAR reveals that a substituent and its stereochemistry at C-3 position, substitution (X) at N-2 arene and a linker (Y) between C-3 position and its attached arene are important for the fused-ring scaffold of pyrrolidino [1,2-c]imidazolidinone to block the active site of NS2B-NS3 protease. This promising structural core will facilitate the discovery of non-peptidic, potent NS2B-NS3 protease inhibitors to stop dengue virus infections.

Keywords: Dengue virus NS2B-NS3 protease inhibitor; HQRJJHXKCFABSI-KBPBESRZSA-N; Linker; Stereochemistry; Structure-activity relationship (SAR); Substitution and substituent; pyrrolidino[1,2-c]imidazolidinone.

MeSH terms

  • Antiviral Agents / chemical synthesis
  • Antiviral Agents / chemistry
  • Antiviral Agents / pharmacology
  • Bridged Bicyclo Compounds, Heterocyclic / chemical synthesis
  • Bridged Bicyclo Compounds, Heterocyclic / chemistry
  • Bridged Bicyclo Compounds, Heterocyclic / pharmacology
  • Catalytic Domain
  • Cyclization
  • Dengue Virus / drug effects*
  • Enzyme Activation / drug effects
  • Imidazolidines / chemical synthesis
  • Imidazolidines / chemistry
  • Imidazolidines / pharmacology*
  • Inhibitory Concentration 50
  • Molecular Docking Simulation
  • Pyrrolidines / chemical synthesis
  • Pyrrolidines / chemistry
  • Pyrrolidines / pharmacology*
  • Serine Endopeptidases / metabolism
  • Stereoisomerism
  • Structure-Activity Relationship
  • Viral Nonstructural Proteins / metabolism

Substances

  • Antiviral Agents
  • Bridged Bicyclo Compounds, Heterocyclic
  • Imidazolidines
  • Pyrrolidines
  • Viral Nonstructural Proteins
  • NS3 protease, dengue virus
  • Serine Endopeptidases