Introducing the Big Knowledge to Use (BK2U) challenge

Ann N Y Acad Sci. 2017 Jan;1387(1):12-24. doi: 10.1111/nyas.13225. Epub 2016 Oct 17.

Abstract

The purpose of the Big Data to Knowledge initiative is to develop methods for discovering new knowledge from large amounts of data. However, if the resulting knowledge is so large that it resists comprehension, referred to here as Big Knowledge (BK), how can it be used properly and creatively? We call this secondary challenge, Big Knowledge to Use. Without a high-level mental representation of the kinds of knowledge in a BK knowledgebase, effective or innovative use of the knowledge may be limited. We describe summarization and visualization techniques that capture the big picture of a BK knowledgebase, possibly created from Big Data. In this research, we distinguish between assertion BK and rule-based BK (rule BK) and demonstrate the usefulness of summarization and visualization techniques of assertion BK for clinical phenotyping. As an example, we illustrate how a summary of many intracranial bleeding concepts can improve phenotyping, compared to the traditional approach. We also demonstrate the usefulness of summarization and visualization techniques of rule BK for drug-drug interaction discovery.

Keywords: Big Data; Big Knowledge; clinical phenotyping; drug-drug interactions; summarization of knowledge; visualization of knowledge.

Publication types

  • Review

MeSH terms

  • Animals
  • Computational Biology / methods*
  • Computational Biology / trends
  • Data Mining / methods
  • Data Mining / trends
  • Decision Making, Computer-Assisted
  • Drug Interactions*
  • Humans
  • Image Interpretation, Computer-Assisted*
  • Image Processing, Computer-Assisted
  • Intracranial Hemorrhages / classification*
  • Intracranial Hemorrhages / epidemiology
  • Intracranial Hemorrhages / etiology
  • Intracranial Hemorrhages / physiopathology
  • Knowledge Bases*
  • Models, Neurological*
  • Pharmaceutical Preparations / classification
  • Systematized Nomenclature of Medicine
  • Terminology as Topic
  • Translational Research, Biomedical / methods*
  • Translational Research, Biomedical / trends

Substances

  • Pharmaceutical Preparations