Alr2954 of Anabaena sp. PCC 7120 with ADP-ribose pyrophosphatase activity bestows abiotic stress tolerance in Escherichia coli

Funct Integr Genomics. 2017 Jan;17(1):39-52. doi: 10.1007/s10142-016-0531-y. Epub 2016 Oct 24.

Abstract

In silico derived properties on experimental validation revealed that hypothetical protein Alr2954 of Anabaena sp. PCC7120 is ADP-ribose pyrophosphatase, which belongs to nudix hydrolase superfamily. Presence of ADP-ribose binding site was attested by ADP-ribose pyrophosphatase activity (K m 44.71 ± 8.043 mM, V max 7.128 ± 0.417 μmol min-1 mg protein-1, and K cat/K m 9.438 × 104 μM-1 min-1). Besides ADP-ribose, the enzyme efficiently hydrolyzed various nucleoside phosphatases such as 8-oxo-dGDP, 8-oxo-dADP, 8-oxo-dGTP, 8-oxo-dATP, GDP-mannose, ADP-glucose, and NADH. qRT-PCR analysis of alr2954 showed significant expression under different abiotic stresses reconfirming its role in stress tolerance. Thus, Alr2954 qualifies to be a member of nudix hydrolase superfamily, which serves as ADP-ribose pyrophosphatase and assists in multiple abiotic stress tolerance.

Keywords: ADP-ribose pyrophosphatase; Anabaena sp. PCC 7120; Cloning and expression; Escherichia coli; Homology modeling; Hypothetical protein; Molecular docking.

MeSH terms

  • Adenosine Diphosphate Ribose / chemistry
  • Adenosine Diphosphate Ribose / metabolism
  • Amino Acid Sequence / genetics
  • Anabaena / enzymology*
  • Binding Sites
  • Cloning, Molecular
  • Computer Simulation
  • Deoxyadenine Nucleotides / metabolism
  • Deoxyguanine Nucleotides / metabolism
  • Escherichia coli / enzymology
  • Escherichia coli / genetics*
  • Hydrolysis
  • Molecular Docking Simulation
  • Pyrophosphatases / chemistry
  • Pyrophosphatases / genetics*
  • Pyrophosphatases / isolation & purification
  • Sequence Homology, Amino Acid
  • Stress, Physiological / genetics*
  • Substrate Specificity

Substances

  • 8-oxodeoxyadenosine triphosphate
  • Deoxyadenine Nucleotides
  • Deoxyguanine Nucleotides
  • 8-oxodeoxyguanosine triphosphate
  • Adenosine Diphosphate Ribose
  • Pyrophosphatases
  • ADPribose pyrophosphatase