Physarum polycephalum for Studying the Function of Histone Modifications In Vivo

Methods Mol Biol. 2017:1528:245-256. doi: 10.1007/978-1-4939-6630-1_15.

Abstract

Histone modifications have been widely correlated with genetic activities. However, how these posttranslational modifications affect the dynamics and the structure of chromatin is poorly understood. Here, we describe the incorporation of the exogenous histone proteins into the slime mold Physarum polycephalum, which has been revealed to be a valuable tool for examining different facets of the function histones in chromatin dynamics like replication-coupled chromatin assembly, histone exchange, and nucleosome turnover.

Keywords: Assembly; Chromatin; Exchange; Histone modification; Nucleosome; Physarum polycephalum; Turnover.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Chromatin / metabolism
  • Chromatin Assembly and Disassembly / genetics
  • Chromatin Assembly and Disassembly / physiology
  • DNA Replication / genetics
  • DNA Replication / physiology
  • Histone Code / genetics
  • Histone Code / physiology
  • Histones / metabolism*
  • Nucleosomes / metabolism
  • Physarum polycephalum / genetics
  • Physarum polycephalum / metabolism*
  • Protein Processing, Post-Translational / genetics
  • Protein Processing, Post-Translational / physiology

Substances

  • Chromatin
  • Histones
  • Nucleosomes