USP44 Is an Integral Component of N-CoR that Contributes to Gene Repression by Deubiquitinating Histone H2B

Cell Rep. 2016 Nov 22;17(9):2382-2393. doi: 10.1016/j.celrep.2016.10.076.

Abstract

Decreased expression of the USP44 deubiquitinase has been associated with global increases in H2Bub1 levels during mouse embryonic stem cell (mESC) differentiation. However, whether USP44 directly deubiquitinates histone H2B or how its activity is targeted to chromatin is not known. We identified USP44 as an integral subunit of the nuclear receptor co-repressor (N-CoR) complex. USP44 within N-CoR deubiquitinates H2B in vitro and in vivo, and ablation of USP44 impairs the repressive activity of the N-CoR complex. Chromatin immunoprecipitation (ChIP) experiments confirmed that USP44 recruitment reduces H2Bub1 levels at N-CoR target loci. Furthermore, high expression of USP44 correlates with reduced levels of H2Bub1 in the breast cancer cell line MDA-MB-231. Depletion of either USP44 or TBL1XR1 impairs the invasiveness of MDA-MB-231 cells in vitro and causes an increase of global H2Bub1 levels. Our findings indicate that USP44 contributes to N-CoR functions in regulating gene expression and is required for efficient invasiveness of triple-negative breast cancer cells.

Keywords: H2B ubiquitination; N-CoR; USP44; breast cancer; transcription.

MeSH terms

  • Cell Line, Tumor
  • HEK293 Cells
  • Histones / metabolism*
  • Humans
  • Neoplasm Invasiveness
  • Nuclear Proteins / chemistry
  • Nuclear Proteins / metabolism
  • Nuclear Receptor Co-Repressor 1 / metabolism*
  • Protein Binding
  • Protein Subunits / metabolism
  • Receptors, Cytoplasmic and Nuclear / chemistry
  • Receptors, Cytoplasmic and Nuclear / metabolism
  • Repressor Proteins / chemistry
  • Repressor Proteins / metabolism
  • Transducin / chemistry
  • Transducin / metabolism
  • Ubiquitin Thiolesterase
  • Ubiquitin-Specific Proteases / metabolism*
  • Ubiquitination*
  • WD40 Repeats

Substances

  • Histones
  • NCOR1 protein, human
  • Nuclear Proteins
  • Nuclear Receptor Co-Repressor 1
  • Protein Subunits
  • Receptors, Cytoplasmic and Nuclear
  • Repressor Proteins
  • TBL1X protein, human
  • TBL1XR1 protein, human
  • USP44 protein, human
  • Ubiquitin Thiolesterase
  • Ubiquitin-Specific Proteases
  • Transducin