Long-term passage of Vif-null HIV-1 in CD4+ T cells expressing sub-lethal levels of APOBEC proteins fails to develop APOBEC resistance

Virology. 2017 Apr:504:1-11. doi: 10.1016/j.virol.2017.01.016. Epub 2017 Jan 25.

Abstract

APOBEC3G (A3G) is a cytidine deaminase with potent antiviral activity that is antagonized by Vif. A3G is expressed in a cell type-specific manner and some semi-permissive cells, including A3.01, express A3G but fail to block replication of Vif-null HIV-1. Here we explored the semi-permissive nature of A3.01 cells and found it to be defined exclusively by the levels of A3G. Indeed, minor changes in A3G levels rendered A3.01 cells either fully permissive or non-permissive for Vif-null HIV-1. Our data indicate that A3.01 cells express sub-lethal levels of catalytically active A3G that affects Vif-null HIV-1 at the proviral level but does not completely block virus replication due to purifying selection. Attempts to use the selective pressure exerted by such sub-lethal levels of A3G to select for APOBEC-resistant Vif-null virus capable of replicating in H9 cells failed despite passaging virus for five months, demonstrating that Vif is a critical viral accessory protein.

Keywords: A3.01 cells; APOBEC3G; Antiviral resistance; Cytidine deaminase; Deamination; HIV-1; Hypermutation; Purifying selection; Vif; Viral evolution.

Publication types

  • Research Support, N.I.H., Intramural

MeSH terms

  • APOBEC-3G Deaminase / antagonists & inhibitors
  • APOBEC-3G Deaminase / genetics*
  • APOBEC-3G Deaminase / metabolism
  • Base Sequence
  • CD4-Positive T-Lymphocytes / virology*
  • Cell Line, Tumor
  • Child, Preschool
  • Female
  • HEK293 Cells
  • HIV Infections / virology
  • HIV-1 / genetics
  • HeLa Cells
  • Humans
  • Jurkat Cells
  • Proviruses / genetics
  • Proviruses / growth & development*
  • RNA Interference
  • RNA, Small Interfering / genetics
  • RNA, Viral / genetics
  • Sequence Analysis, RNA
  • Virus Replication / genetics*
  • vif Gene Products, Human Immunodeficiency Virus / genetics
  • vif Gene Products, Human Immunodeficiency Virus / metabolism*

Substances

  • RNA, Small Interfering
  • RNA, Viral
  • vif Gene Products, Human Immunodeficiency Virus
  • vif protein, Human immunodeficiency virus 1
  • APOBEC-3G Deaminase
  • APOBEC3G protein, human