Conservation of residue interactions in a family of Ca-binding proteins

Protein Eng. 1989 Aug;2(8):589-96. doi: 10.1093/protein/2.8.589.

Abstract

In the TNC family of Ca-binding proteins (calmodulin, parvalbumin, intestinal calcium binding protein and troponin C) approximately 70 well-conserved amino acid sequences and six crystal structures are known. We find a clear correlation between residue contacts in the structures and residue conservation in the sequences: residues with strong sidechain-sidechain contacts in the three-dimenesional structure tend to be the more conserved in the sequence. This is one way to quantify the intuitive notion of the importance of sidechain interactions for maintaining protein three-dimensional structure in evolution and may usefully be taken into account in planning point mutations in protein engineering.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Calcium-Binding Proteins / genetics*
  • Computer Graphics
  • Electronic Data Processing
  • Humans
  • Molecular Sequence Data
  • Mutation
  • Protein Conformation
  • Rats
  • X-Ray Diffraction

Substances

  • Calcium-Binding Proteins