Stepwise assembly of functional C-terminal REST/NRSF transcriptional repressor complexes as a drug target

Protein Sci. 2017 May;26(5):997-1011. doi: 10.1002/pro.3142. Epub 2017 Mar 12.

Abstract

In human cells, thousands of predominantly neuronal genes are regulated by the repressor element 1 (RE1)-silencing transcription factor/neuron-restrictive silencer factor (REST/NRSF). REST/NRSF represses transcription of these genes in stem cells and non-neuronal cells by tethering corepressor complexes. Aberrant REST/NRSF expression and intracellular localization are associated with cancer and neurodegeneration in humans. To date, detailed molecular analyses of REST/NRSF and its C-terminal repressor complex have been hampered largely by the lack of sufficient amounts of purified REST/NRSF and its complexes. Therefore, the aim of this study was to express and purify human REST/NRSF and its C-terminal interactors in a baculovirus multiprotein expression system as individual proteins and coexpressed complexes. All proteins were enriched in the nucleus, and REST/NRSF was isolated as a slower migrating form, characteristic of nuclear REST/NRSF in mammalian cells. Both REST/NRSF alone and its C-terminal repressor complex were functionally active in histone deacetylation and histone demethylation and bound to RE1/neuron-restrictive silencer element (NRSE) sites. Additionally, the mechanisms of inhibition of the small-molecule drugs 4SC-202 and SP2509 were analyzed. These drugs interfered with the viability of medulloblastoma cells, where REST/NRSF has been implicated in cancer pathogenesis. Thus, a resource for molecular REST/NRSF studies and drug development has been established.

Keywords: CoREST; DNA transcription; HDAC1; LSD1; REST/NRSF; drug mechanism; histone deacetylation; histone demethylation; medulloblastoma; transcriptional repression.

MeSH terms

  • Acetylation
  • Animals
  • Benzamides* / chemistry
  • Benzamides* / pharmacology
  • Cell Nucleus / chemistry
  • Cell Nucleus / genetics
  • Cell Nucleus / metabolism
  • Enhancer Elements, Genetic*
  • Histones / chemistry
  • Histones / genetics
  • Histones / metabolism
  • Humans
  • Hydrazines* / chemistry
  • Hydrazines* / pharmacology
  • Multiprotein Complexes* / antagonists & inhibitors
  • Multiprotein Complexes* / chemistry
  • Multiprotein Complexes* / genetics
  • Multiprotein Complexes* / metabolism
  • Neoplasm Proteins* / antagonists & inhibitors
  • Neoplasm Proteins* / chemistry
  • Neoplasm Proteins* / genetics
  • Neoplasm Proteins* / metabolism
  • Protein Domains
  • Repressor Proteins* / antagonists & inhibitors
  • Repressor Proteins* / chemistry
  • Repressor Proteins* / genetics
  • Repressor Proteins* / metabolism
  • Sf9 Cells
  • Spodoptera
  • Sulfonamides* / chemistry
  • Sulfonamides* / pharmacology

Substances

  • Benzamides
  • Histones
  • Hydrazines
  • Multiprotein Complexes
  • Neoplasm Proteins
  • RE1-silencing transcription factor
  • Repressor Proteins
  • SP2509
  • Sulfonamides
  • domatinostat