Rational Design and Applications of Semisynthetic Modular Biosensors: SNIFITs and LUCIDs

Methods Mol Biol. 2017:1596:101-117. doi: 10.1007/978-1-4939-6940-1_7.

Abstract

Biosensors are used in many fields to measure the concentration of analytes, both in a cellular context and in human samples for medical care. Here, we outline the design of two types of modular biosensors: SNAP-tag-based indicators with a Fluorescent Intramolecular Tether (SNIFITs) and LUCiferase-based Indicators of Drugs (LUCIDs). These semisynthetic biosensors quantitatively measure analyte concentrations in vitro and on cell surfaces by an intramolecular competitive mechanism. We provide an overview of how to design and apply SNIFITs and LUCIDs.

Keywords: Biosensors; CLIP-tag; Cell-surface biosensors; Intramolecular ligands; Polyproline linkers; Protein engineering; Protein switches; SNAP-tag; Self-labeling proteins; Therapeutic drug monitoring.

MeSH terms

  • Biosensing Techniques / methods
  • Cell Line
  • Escherichia coli / genetics
  • Fluorescent Dyes / chemistry*
  • HEK293 Cells
  • Humans
  • Protein Engineering / methods
  • Proteins / genetics*

Substances

  • Fluorescent Dyes
  • Proteins