Identification of 8 Novel Mutations in Nephrogenesis-Related Genes in Chinese Han Patients with Unilateral Renal Agenesis

Am J Nephrol. 2017;46(1):55-63. doi: 10.1159/000477590. Epub 2017 Jun 16.

Abstract

Background: Few genetic studies have focused on unilateral renal agenesis (URA), which is a disorder with insidious clinical manifestations and a tendency to result in renal failure. We aimed to detect pathogenic mutations in nephrogenesis-related genes, which were identified by a literature review conducted among a large cohort of Chinese Han patients with URA.

Methods: Totally, 86 unrelated URA patients were included. All URA patients were diagnosed by employing radiological methods. Patients with a solitary kidney owing to nephrectomy or renal atrophy due to secondary factors were excluded. Nine (10.5%) patients had a family history of abnormal nephrogenesis. Fifteen (17.4%) had other malformations in the urogenital system. All coding exons and adjacent intron regions of 25 genes were analyzed using next-generation sequencing and validated by Sanger sequencing and 100 ethnically matched healthy controls.

Results: Ten conserved mutations (9 missense mutations and 1 deletion mutation) were identified in SALL1, EYA1, RET, HNF1B, DSTYK, WNT4, and SIX5. All mutations were novel or rare (frequency <0.1%) in the public databases and absent from the 100 healthy controls. Nine patients carried mutations in candidate genes. Most of the patients carried one single heterozygous mutation, except for 2, who respectively carried compound heterozygous mutations and 2 single heterozygous mutations. In addition, 2 patients shared the same mutation in DSTYK.

Conclusion: A total of 10.5% of our URA cases could be explained by mutations in our candidate genes. The mutations in nephrogenesis-related genes in the Chinese Han patients with URA had a decentralized distribution without any hotspot mutations.

Keywords: Chinese Han population; Gene mutations; Nephrogenesis; Unilateral renal agenesis.

MeSH terms

  • Adolescent
  • Adult
  • Aged
  • Asian People / genetics*
  • Child
  • Cohort Studies
  • Exons / genetics
  • Female
  • Genetic Predisposition to Disease*
  • Hepatocyte Nuclear Factor 1-beta / genetics
  • Heterozygote
  • High-Throughput Nucleotide Sequencing
  • Homeodomain Proteins / genetics
  • Humans
  • Intracellular Signaling Peptides and Proteins / genetics
  • Introns / genetics
  • Kidney / embryology*
  • Male
  • Middle Aged
  • Mutation, Missense
  • Nuclear Proteins / genetics
  • Phenotype
  • Protein Tyrosine Phosphatases / genetics
  • Proto-Oncogene Proteins c-ret / genetics
  • Receptor-Interacting Protein Serine-Threonine Kinases / genetics
  • Sequence Deletion
  • Solitary Kidney / genetics*
  • Transcription Factors / genetics
  • Wnt4 Protein / genetics
  • Young Adult

Substances

  • HNF1B protein, human
  • Homeodomain Proteins
  • Intracellular Signaling Peptides and Proteins
  • Nuclear Proteins
  • SALL1 protein, human
  • SIX5 protein, human
  • Transcription Factors
  • WNT4 protein, human
  • Wnt4 Protein
  • Hepatocyte Nuclear Factor 1-beta
  • Proto-Oncogene Proteins c-ret
  • RET protein, human
  • Receptor-Interacting Protein Serine-Threonine Kinases
  • DSTYK protein, human
  • EYA1 protein, human
  • Protein Tyrosine Phosphatases