PARP-1 Interaction with and Activation by Histones and Nucleosomes

Methods Mol Biol. 2017:1608:255-267. doi: 10.1007/978-1-4939-6993-7_17.

Abstract

Poly(ADP-ribose) Polymerase 1 (PARP-1) is an abundant chromatin associated protein, typical for most eukaryotic nuclei. The localization of PARP-1 in chromatin and its enzymatic activation involves multiple interactions of PARP-1 with nucleosomal histones, other proteins, and DNA. We report a set of methods designed to reconstitute PARP-1 regulation in vitro. These methods involve the expression of PARP-1 and PARP-1-regulating proteins using bacterial and eukaryotic systems, purification of these proteins using chromatography, testing of individual interactions in vitro, assembly of active complexes, and reconstitution of PARP-1 regulating reactions in vitro.

Keywords: Jil-1 kinase; Nucleosomal histones; Nucleosome; PARP-1; PARP-1 activation; PARP-1 binding; Poly(ADP-ribose).

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Animals
  • Chromatin / genetics
  • Chromatin / metabolism
  • DNA / genetics
  • DNA / metabolism
  • Histones / genetics
  • Histones / metabolism*
  • Humans
  • Nucleosomes / genetics
  • Nucleosomes / metabolism*
  • Poly (ADP-Ribose) Polymerase-1 / genetics
  • Poly (ADP-Ribose) Polymerase-1 / metabolism*
  • Poly(ADP-ribose) Polymerases / genetics
  • Poly(ADP-ribose) Polymerases / metabolism
  • Transcription, Genetic / genetics

Substances

  • Chromatin
  • Histones
  • Nucleosomes
  • DNA
  • Poly (ADP-Ribose) Polymerase-1
  • Poly(ADP-ribose) Polymerases