We isolated East/Central/South African genotype chikungunya virus during the 2016 epidemic in Rio de Janeiro, Brazil. Genome sequencing revealed unique mutations in the nonstructural protein 4 (NSP4-A481D) and envelope protein 1 (E1-K211T). Moreover, all Brazil East/Central/South isolates shared the exclusive mutations E1-M407L and E2-A103T.
Keywords: Brazil; Chikungunya virus; ECSA genotype; East/Central/South African Genotype; Zika virus; alphaviruses; arboviruses; dengue virus; mosquitoes; vector-borne infections; viruses.