Aspartate-β-semialdeyhyde dehydrogenase as a potential therapeutic target of Mycobacterium tuberculosis H37Rv: Evidence from in silico elementary mode analysis of biological network model

J Cell Biochem. 2018 Mar;119(3):2832-2842. doi: 10.1002/jcb.26458. Epub 2017 Nov 24.

Abstract

The emergence of multi-drug resistant strains and co-occurrence of tuberculosis with HIV creates a major burden to the human health globally. Failure of primary antibacterial therapy necessitates the identification of new mycobacterial drugs. In this study, a comprehensive analysis involving bottom-up systems biology approach was applied wherein we have identified potential therapeutic targets of Mycobacterium tuberculosis infections. Our study prioritized M. tuberculosis therapeutic targets (aspartate-β-semialdeyhde dehydrogenase [ASD], dihydrodipicolinate reductase and diaminopimelate decarboxylase) based on flux and elementary mode analysis using direct mathematical modeling of the relevant metabolic pathways. Molecular docking and simulation studies of the priority target (ie, ASD) revealed the therapeutic potential of the selected natural products (Huperzine A, Rosmarinic acid, and Curcumin) based ASD inhibitors. The study highlights the crucial role of systems biology in conjunction with molecular interaction (docking) for probing novel leads against an increasingly resistant pathogen, M. tuberculousis.

Keywords: elementary mode analysis; essential genes; mathematical modeling; molecular docking and simulation; orthologous.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Antitubercular Agents / chemistry*
  • Aspartate-Semialdehyde Dehydrogenase* / antagonists & inhibitors
  • Aspartate-Semialdehyde Dehydrogenase* / chemistry
  • Computer Simulation
  • Enzyme Inhibitors / chemistry*
  • Molecular Docking Simulation*
  • Mycobacterium tuberculosis / enzymology*
  • Tuberculosis / drug therapy
  • Tuberculosis / enzymology

Substances

  • Antitubercular Agents
  • Enzyme Inhibitors
  • Aspartate-Semialdehyde Dehydrogenase