Pourbaix Diagram, Proton-Coupled Electron Transfer, and Decay Kinetics of a Protein Tryptophan Radical: Comparing the Redox Properties of W32 and Y32 Generated Inside the Structurally Characterized α3W and α3Y Proteins

J Am Chem Soc. 2018 Jan 10;140(1):185-192. doi: 10.1021/jacs.7b08032. Epub 2017 Dec 19.

Abstract

Protein-based "hole" hopping typically involves spatially arranged redox-active tryptophan or tyrosine residues. Thermodynamic information is scarce for this type of process. The well-structured α3W model protein was studied by protein film square wave voltammetry and transient absorption spectroscopy to obtain a comprehensive thermodynamic and kinetic description of a buried tryptophan residue. A Pourbaix diagram, correlating thermodynamic potentials (E°') with pH, is reported for W32 in α3W and compared to equivalent data recently presented for Y32 in α3Y ( Ravichandran , K. R. ; Zong , A. B. ; Taguchi , A. T. ; Nocera , D. G. ; Stubbe , J. ; Tommos , C. J. Am. Chem. Soc. 2017 , 139 , 2994 - 3004 ). The α3W Pourbaix diagram displays a pKOX of 3.4, a E°'(W32(N•+/NH)) of 1293 mV, and a E°'(W32(N/NH); pH 7.0) of 1095 ± 4 mV versus the normal hydrogen electrode. W32(N/NH) is 109 ± 4 mV more oxidizing than Y32(O/OH) at pH 5.4-10. In the voltammetry measurements, W32 oxidation-reduction occurs on a time scale of about 4 ms and is coupled to the release and subsequent uptake of one full proton to and from bulk. Kinetic analysis further shows that W32 oxidation likely involves pre-equilibrium electron transfer followed by proton transfer to a water or small water cluster as the primary acceptor. A well-resolved absorption spectrum of W32 is presented, and analysis of decay kinetics show that W32 persists ∼104 times longer than aqueous W due to significant stabilization by the protein. The redox characteristics of W32 and Y32 are discussed relative to global and local protein properties.

Publication types

  • Comparative Study
  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Electron Transport
  • Free Radicals / chemistry
  • Kinetics
  • Oxidation-Reduction
  • Proteins / chemistry*
  • Protons*
  • Thermodynamics
  • Tryptophan / chemistry*

Substances

  • Free Radicals
  • Proteins
  • Protons
  • Tryptophan