Hyperstretching DNA

Nat Commun. 2017 Dec 19;8(1):2197. doi: 10.1038/s41467-017-02396-1.

Abstract

The three-dimensional structure of DNA is highly susceptible to changes by mechanical and biochemical cues in vivo and in vitro. In particular, large increases in base pair spacing compared to regular B-DNA are effected by mechanical (over)stretching and by intercalation of compounds that are widely used in biophysical/chemical assays and drug treatments. We present single-molecule experiments and a three-state statistical mechanical model that provide a quantitative understanding of the interplay between B-DNA, overstretched DNA and intercalated DNA. The predictions of this model include a hitherto unconfirmed hyperstretched state, twice the length of B-DNA. Our force-fluorescence experiments confirm this hyperstretched state and reveal its sequence dependence. These results pin down the physical principles that govern DNA mechanics under the influence of tension and biochemical reactions. A predictive understanding of the possibilities and limitations of DNA extension can guide refined exploitation of DNA in, e.g., programmable soft materials and DNA origami applications.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence / genetics
  • Benzoxazoles / chemistry
  • Biomechanical Phenomena / genetics
  • DNA / chemistry*
  • DNA / genetics
  • Elasticity
  • Fluorescence
  • Models, Molecular*
  • Nucleic Acid Conformation*
  • Quinolinium Compounds / chemistry
  • Single Molecule Imaging / methods

Substances

  • Benzoxazoles
  • Quinolinium Compounds
  • YO-PRO 1
  • DNA