Glycomyces tritici sp. nov., isolated from rhizosphere soil of wheat (Triticum aestivum L.) and emended description of the genus Glycomyces

Antonie Van Leeuwenhoek. 2018 Jul;111(7):1087-1093. doi: 10.1007/s10482-017-1011-7. Epub 2017 Dec 30.

Abstract

A novel actinomycete strain, designated NEAU-C2T, was isolated from rhizosphere soil of wheat (Triticum aestivum L.), and subjected to a polyphasic taxonomic study. Morphological and chemotaxonomic properties of this strain were consistent with the description of the genus Glycomyces. Growth was found to occur at a temperature range of 15-40 °C, pH 6-10 and NaCl concentrations of 0-4%. The cell wall was found to contain meso-diaminopimelic acid and the whole cell sugars were identified as galactose, xylose and ribose. The predominant menaquinones were identified as MK-10(H6) and MK-10(H2). The polar lipids were found to consist of diphosphatidylglycerol, phosphatidylinositol, phosphatidylglycerol, phosphoglycolipids and an unidentified glycolipid. The major fatty acids were identified as anteiso-C15:0, iso-C16:0, anteiso-C17:0 and iso-C15:0. 16S rRNA gene sequence similarity studies showed that strain NEAU-C2T belongs to the genus Glycomyces with high sequence similarity to Glycomyces algeriensis NRRL B-16327T (99.0% sequence similarity). Some physiological and biochemical properties and low DNA-DNA relatedness values enabled the strain to be differentiated from closely related species of the genus Glycomyces. It is concluded that the isolate can be classified as representing a novel species of the genus Glycomyces, for which the name Glycomyces tritici is proposed. The type strain is NEAU-C2T (= DSM 104644T = CGMCC 4.7410T).

Keywords: 16S rRNA gene; Glycomyces tritici sp. nov.; Polyphasic taxonomic study.

MeSH terms

  • Actinobacteria / classification
  • Actinobacteria / genetics
  • Actinobacteria / isolation & purification*
  • Actinobacteria / metabolism
  • DNA, Bacterial / genetics
  • Fatty Acids / chemistry
  • Fatty Acids / metabolism
  • Phylogeny
  • RNA, Ribosomal, 16S / genetics
  • Rhizosphere
  • Soil
  • Soil Microbiology*
  • Triticum / growth & development*

Substances

  • DNA, Bacterial
  • Fatty Acids
  • RNA, Ribosomal, 16S
  • Soil