Pro-metastatic collagen lysyl hydroxylase dimer assemblies stabilized by Fe2+-binding

Nat Commun. 2018 Feb 6;9(1):512. doi: 10.1038/s41467-018-02859-z.

Abstract

Collagen lysyl hydroxylases (LH1-3) are Fe2+- and 2-oxoglutarate (2-OG)-dependent oxygenases that maintain extracellular matrix homeostasis. High LH2 levels cause stable collagen cross-link accumulations that promote fibrosis and cancer progression. However, developing LH antagonists will require structural insights. Here, we report a 2 Å crystal structure and X-ray scattering on dimer assemblies for the LH domain of L230 in Acanthamoeba polyphaga mimivirus. Loop residues in the double-stranded β-helix core generate a tail-to-tail dimer. A stabilizing hydrophobic leucine locks into an aromatic tyrosine-pocket on the opposite subunit. An active site triad coordinates Fe2+. The two active sites flank a deep surface cleft that suggest dimerization creates a collagen-binding site. Loss of Fe2+-binding disrupts the dimer. Dimer disruption and charge reversal in the cleft increase Km and reduce LH activity. Ectopic L230 expression in tumors promotes collagen cross-linking and metastasis. These insights suggest inhibitor targets for fibrosis and cancer.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Catalytic Domain
  • Cell Line, Tumor
  • Collagen / chemistry
  • Collagen / metabolism
  • Crystallography, X-Ray
  • Enzyme Stability
  • Humans
  • Iron / chemistry*
  • Iron / metabolism
  • Lung Neoplasms / genetics
  • Lung Neoplasms / metabolism
  • Lung Neoplasms / pathology
  • Mice, Nude
  • Mimiviridae / enzymology*
  • Mimiviridae / genetics
  • Mutation
  • Neoplasm Metastasis
  • Procollagen-Lysine, 2-Oxoglutarate 5-Dioxygenase / chemistry*
  • Procollagen-Lysine, 2-Oxoglutarate 5-Dioxygenase / genetics
  • Procollagen-Lysine, 2-Oxoglutarate 5-Dioxygenase / metabolism
  • Protein Binding
  • Protein Multimerization*
  • Scattering, Small Angle
  • Sequence Homology, Amino Acid
  • Transplantation, Heterologous
  • Viral Proteins / chemistry*
  • Viral Proteins / genetics
  • Viral Proteins / metabolism
  • X-Ray Diffraction

Substances

  • Viral Proteins
  • Collagen
  • Iron
  • Procollagen-Lysine, 2-Oxoglutarate 5-Dioxygenase