Cryo-EM structure of the bacterial actin AlfA reveals unique assembly and ATP-binding interactions and the absence of a conserved subdomain

Proc Natl Acad Sci U S A. 2018 Mar 27;115(13):3356-3361. doi: 10.1073/pnas.1715836115. Epub 2018 Feb 13.

Abstract

Bacterial actins are an evolutionarily diverse family of ATP-dependent filaments built from protomers with a conserved structural fold. Actin-based segregation systems are encoded on many bacterial plasmids and function to partition plasmids into daughter cells. The bacterial actin AlfA segregates plasmids by a mechanism distinct from other partition systems, dependent on its unique dynamic properties. Here, we report the near-atomic resolution electron cryo-microscopy structure of the AlfA filament, which reveals a strikingly divergent filament architecture resulting from the loss of a subdomain conserved in all other actins and a mode of ATP binding. Its unusual assembly interfaces and nucleotide interactions provide insight into AlfA dynamics, and expand the range of evolutionary variation accessible to actin quaternary structure.

Keywords: bacterial actin; cryo-EM; cytoskeleton; plasmid segregation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Actins / metabolism*
  • Actins / ultrastructure*
  • Adenosine Triphosphate / metabolism*
  • Amino Acid Sequence
  • Bacterial Proteins / metabolism*
  • Bacterial Proteins / ultrastructure*
  • Cryoelectron Microscopy
  • Crystallography, X-Ray
  • Cytoskeleton / metabolism
  • Models, Molecular
  • Protein Domains
  • Sequence Homology

Substances

  • Actins
  • Bacterial Proteins
  • Adenosine Triphosphate

Associated data

  • PDB/6BQW