A natural recombinant PRRSV between HP-PRRSV JXA1-like and NADC30-like strains

Transbound Emerg Dis. 2018 Aug;65(4):1078-1086. doi: 10.1111/tbed.12852. Epub 2018 Mar 8.

Abstract

Porcine reproductive and respiratory syndrome virus (PRRSV) is a major economically significant pathogen that has adversely affected China's swine industry. Currently, a novel type 2 PRRSV, called the NADC30-like strain, is epidemic in numerous provinces of China, and commercial vaccines provide limited protection for infected animals. The extensive recombination phenomenon among NADC30-like PRRSVs is identified as a unique molecular characteristic of the virus. However, our understanding of how recombination influences NADC30-like PRRSVs is largely inadequate. In this study, we analysed the genetic characteristics of a recombinant NADC30-like PRRSV (SC-d) and examined its pathogenicity compared with a non-recombinant NADC30-like PRRSV (SD-A19) and a highly pathogenic PRRSV (HuN4). SC-d has three discontinuous deletions in nsp2, consistent with NADC30 isolated from the United States in 2008. Furthermore, we identified four recombination breakpoints in the SC-d genome, which separated the SC-d genome into four regions (regions A, B, C and D). Regions A and C are closely related to the JXA1-like strain, one of the earliest Chinese HP-PRRSV strains, and regions B and D are closely related to the NADC30 strain. Moreover, SC-d inoculated piglets exhibited a persistent fever, moderate weight loss, mild thymus atrophy and obvious microscopic lung lesions. In summary, the recombinant NADC30-like PRRSV SC-d strain displayed a higher pathogenicity than the non-recombinant NADC30-like PRRSV SD-A19 strain; however, the pathogenicity of the NADC30-like PRRSV SC-d was lower compared with the HP-PRRSV HuN4 strain in piglets. Our findings demonstrate that recombination is responsible for the enormous genetic diversity and pathogenicity variance of the NADC30-like PRRSV in China. This study provides a theoretical basis for developing a more reasonable PRRSV control and prevention strategy.

Keywords: NADC30-like PRRSV; genetic diversity; pathogenicity; porcine reproductive and respiratory syndrome virus (PRRSV); recombination.

MeSH terms

  • Amino Acid Sequence
  • Animals
  • China / epidemiology
  • Evolution, Molecular*
  • Genetic Variation
  • Genome, Viral*
  • Lung / virology
  • Molecular Sequence Data
  • Phylogeny
  • Porcine Reproductive and Respiratory Syndrome / epidemiology
  • Porcine Reproductive and Respiratory Syndrome / virology*
  • Porcine respiratory and reproductive syndrome virus / classification*
  • Porcine respiratory and reproductive syndrome virus / genetics*
  • Porcine respiratory and reproductive syndrome virus / pathogenicity
  • Real-Time Polymerase Chain Reaction / veterinary
  • Recombination, Genetic*
  • Sequence Analysis, DNA
  • Swine
  • Viral Nonstructural Proteins / genetics
  • Virulence

Substances

  • Viral Nonstructural Proteins

Associated data

  • GENBANK/AY032626
  • GENBANK/EF112445
  • GENBANK/EF635006
  • GENBANK/AY262352.1
  • GENBANK/JN662424
  • GENBANK/JQ326271.1
  • GENBANK/EF536003.1
  • GENBANK/JN654459
  • GENBANK/DQ176019
  • GENBANK/M96262
  • GENBANK/FJ548852.1
  • GENBANK/JQ804986.1
  • GENBANK/MF375261
  • GENBANK/MF375260