Streptomyces urticae sp. nov., isolated from rhizosphere soil of Urtica urens L

Antonie Van Leeuwenhoek. 2018 Oct;111(10):1835-1843. doi: 10.1007/s10482-018-1072-2. Epub 2018 Mar 27.

Abstract

Two novel Gram-stain positive, spore-forming, aerobic actinomycetes, designated NEAU-PCY-1T and NEAU-PCY-2, were isolated from rhizosphere soil of Urtica urens L. collected from Anshan, Liaoning Province, northeast China. The 16S rRNA gene sequence analysis showed that strains NEAU-PCY-1T and NEAU-PCY-2 exhibited 99.8% similarity with each other and are closely related to Streptomyces abietis DSM 42080T (98.2, 98.3%) and Streptomyces fildesensis DSM 41987T (98.0, 98.1%). Phylogenetic analysis based on the 16S rRNA gene sequences indicated that the two strains formed a cluster with these two closely related species. Moreover, DNA-DNA hybridization results and some phenotypic, physiological and biochemical properties differentiated the two strains from their close relatives in the genus Streptomyces. Based on a polyphasic taxonomy study, strains NEAU-PCY-1T and NEAU-PCY-2 are considered to represent a novel species of the genus Streptomyces, for which the name Streptomyces urticae sp. nov. is proposed, with NEAU-PCY-1T (= DSM 105115T = CCTCC AA 2017015T) as the type strain.

Keywords: 16S rRNA gene; Polyphasic taxonomy; Rhizosphere soil of Urtica urens L.; Streptomyces urticae sp. nov..

MeSH terms

  • DNA, Bacterial
  • Metabolomics / methods
  • Molecular Typing
  • Phenotype
  • Phylogeny
  • RNA, Ribosomal, 16S / genetics
  • Rhizosphere*
  • Rosales / microbiology*
  • Soil Microbiology*
  • Streptomyces / classification*
  • Streptomyces / genetics
  • Streptomyces / isolation & purification
  • Streptomyces / ultrastructure

Substances

  • DNA, Bacterial
  • RNA, Ribosomal, 16S