A genetically encoded 19F NMR probe for lysine acetylation

Chem Commun (Camb). 2018 Apr 12;54(31):3879-3882. doi: 10.1039/c7cc09825a.

Abstract

Advances in acetylated protein-protein/DNA interactions depend on the development of a novel NMR (nuclear magnetic resonance) probe to study the conformational changes of acetylated proteins. However, the method for detecting the acetylated protein conformation is underdeveloped. Herein, an acetyllysine mimic has been exploited for detecting the conformational changes of acetylated p53-protein/DNA interactions by genetic code expansion and 19F NMR. This 19F NMR probe shows high structural similarity to acetyllysine and could not be deacetylated by sirtuin deacetylase in vitro/vivo. Moreover, acetylation of p53 K164 is reported to be deacetylated by SIRT2 for the first time.

MeSH terms

  • Acetylation
  • Amino Acyl-tRNA Synthetases / genetics
  • DNA / chemistry
  • Fluorine Radioisotopes
  • HEK293 Cells
  • Humans
  • Lysine / analogs & derivatives*
  • Lysine / chemistry
  • Lysine / genetics
  • Lysine / metabolism*
  • Magnetic Resonance Spectroscopy
  • Methanosarcina barkeri / enzymology
  • Molecular Probes / chemistry*
  • Molecular Probes / genetics
  • Protein Conformation
  • Sirtuin 2 / chemistry
  • Tumor Suppressor Protein p53 / chemistry
  • Tumor Suppressor Protein p53 / genetics
  • Tumor Suppressor Protein p53 / metabolism*

Substances

  • Fluorine Radioisotopes
  • Molecular Probes
  • N-epsilon-trifluoro-lysine
  • Tumor Suppressor Protein p53
  • DNA
  • Sirtuin 2
  • Amino Acyl-tRNA Synthetases
  • Lysine