Crystal structure of pyrimidine-nucleoside phosphorylase from Bacillus subtilis in complex with imidazole and sulfate

Acta Crystallogr F Struct Biol Commun. 2018 Apr 1;74(Pt 4):193-197. doi: 10.1107/S2053230X18002935. Epub 2018 Mar 22.

Abstract

Pyrimidine-nucleoside phosphorylase catalyzes the phosphorolytic cleavage of thymidine and uridine with equal activity. Investigation of this protein is essential for anticancer drug design. Here, the structure of this protein from Bacillus subtilis in complex with imidazole and sulfate is reported at 1.9 Å resolution, which is an improvement on the previously reported structure at 2.6 Å resolution. The localization and position of imidazole in the nucleoside-binding site reflects the possible binding of ligands that possess an imidazole ring.

Keywords: Bacillus subtilis; X-ray analysis; imidazole; nucleoside phosphorylases; nucleosides; protein crystallography; pyrimidine-nucleoside phosphorylase.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Bacillus subtilis / enzymology*
  • Binding Sites
  • Catalytic Domain
  • Crystallization
  • Crystallography, X-Ray
  • Imidazoles / chemistry
  • Imidazoles / metabolism*
  • Models, Molecular
  • Protein Conformation
  • Pyrimidine Phosphorylases / chemistry*
  • Pyrimidine Phosphorylases / metabolism*
  • Substrate Specificity
  • Sulfates / chemistry
  • Sulfates / metabolism*

Substances

  • Imidazoles
  • Sulfates
  • imidazole
  • Pyrimidine Phosphorylases