Accuracy of the HPV status site-specific factor 10 (SSF-10) variable for patients with oropharyngeal cancers in the Iowa Cancer Registry, 2010-2014

Head Neck. 2018 Oct;40(10):2199-2209. doi: 10.1002/hed.25314. Epub 2018 Jun 22.

Abstract

Background: Surveillance, Epidemiology, and End Results Cancer Registries (SEER) began collecting human papillomavirus (HPV) status for upper aerodigestive tract cancers in 2010. However, classification of p16-testing was not included in the Collaborative Stage coding guidelines, potentially leading to inconsistent coding.

Methods: The HPV values for Iowa patients with oropharyngeal cancers (n = 824) were recoded based on modified guidelines that included p16 test results, and compared with the original guidelines.

Results: Forty percent of patients were recoded to a different value, and the HPV testing rate increased from 45% to 55%; 56% received p16-testing only. Of those originally coded as HPV-type 16 (n = 187), 89% were recoded to HPV-not otherwise specified (NOS). When comparing high-level positive/negative/not done categories, original coding captured 81% of patients with HPV-positive cancers.

Conclusion: p16 was the most common HPV test but was inconsistently coded as HPV-testing. p16-positivity was also erroneously equated with HPV-type 16. Adding a separate p16 variable would improve consistency and accuracy of HPV coding.

Keywords: American Joint Committee on Cancer (AJCC) staging; Surveillance, Epidemiology, and End Results (SEER); head and neck cancer; human papillomavirus (HPV)-related cancer; oropharyngeal cancer.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Adult
  • Aged
  • Carcinoma, Squamous Cell / epidemiology
  • Carcinoma, Squamous Cell / virology
  • Clinical Coding
  • DNA, Viral / analysis
  • Female
  • Humans
  • Iowa / epidemiology
  • Male
  • Middle Aged
  • Oropharyngeal Neoplasms / epidemiology*
  • Oropharyngeal Neoplasms / virology*
  • Papillomaviridae / genetics
  • Papillomavirus Infections / epidemiology*
  • Public Health Surveillance
  • Registries
  • SEER Program

Substances

  • DNA, Viral