Solution structure of a ubiquitin-like protein from Trypanosoma brucei

Protein Sci. 2018 Oct;27(10):1831-1836. doi: 10.1002/pro.3492. Epub 2018 Oct 3.

Abstract

Ubiquitin-like proteins, similar to ubiquitin, can either exist freely or be covalently attached to other proteins via an enzymatic cascade. The ubiquitin-like proteins play roles in multiple biological processes including transcription, stress responses, DNA repair and so on. In this study, a novel ubiquitin-like protein (TbUbl11) was identified in Trypanosoma brucei. The solution structure of TbUbl11 was solved by NMR spectroscopy. TbUbl11 adopts a conserved β-grasp fold composed by a five-stranded β-sheet curling around a central α-helix, similar to other ubiquitin-like proteins. Meanwhile, some differences between TbUbl11 and other ubiquitin-like proteins were also identified. Additionally, we revealed that TbUbl11 is located in the whole cell body of procyclic-form T. brucei.

Keywords: NMR; Trypanosoma brucei; solution structure; ubiquitin-like protein.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Crystallography, X-Ray
  • Models, Molecular
  • Protein Conformation
  • Sequence Alignment
  • Solutions
  • Trypanosoma brucei brucei / chemistry*
  • Ubiquitins / chemistry*

Substances

  • Solutions
  • Ubiquitins

Associated data

  • PDB/5ZMB
  • PDB/5XPY
  • PDB/2N7D
  • PDB/2N7E
  • PDB/2KAN
  • PDB/3Q3F