Negative regulation of conserved RSL class I bHLH transcription factors evolved independently among land plants

Elife. 2018 Aug 23:7:e38529. doi: 10.7554/eLife.38529.

Abstract

Basic helix-loop-helix transcription factors encoded by RSL class I genes control a gene regulatory network that positively regulates the development of filamentous rooting cells - root hairs and rhizoids - in land plants. The GLABRA2 transcription factor negatively regulates these genes in the angiosperm Arabidopsis thaliana. To find negative regulators of RSL class I genes in early diverging land plants we conducted a mutant screen in the liverwort Marchantia polymorpha. This identified FEW RHIZOIDS1 (MpFRH1) microRNA (miRNA) that negatively regulates the RSL class I gene MpRSL1. The miRNA and its mRNA target constitute a feedback mechanism that controls epidermal cell differentiation. MpFRH1 miRNA target sites are conserved among liverwort RSL class I mRNAs but are not present in RSL class I mRNAs of other land plants. These findings indicate that while RSL class I genes are ancient and conserved, independent negative regulatory mechanisms evolved in different lineages during land plant evolution.

Keywords: Marchantia polymorpha; evolutionary biology; plant biology; plant development; transcription factors.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Basic Helix-Loop-Helix Transcription Factors / genetics*
  • Basic Helix-Loop-Helix Transcription Factors / metabolism
  • Cell Differentiation
  • Conserved Sequence*
  • DNA, Bacterial / genetics
  • Embryophyta / metabolism*
  • Evolution, Molecular*
  • Gene Expression Regulation, Plant
  • Marchantia / cytology
  • MicroRNAs / chemistry
  • MicroRNAs / genetics
  • MicroRNAs / metabolism
  • Nucleic Acid Conformation
  • Phenotype
  • Phylogeny
  • Plant Epidermis / cytology
  • Plant Epidermis / metabolism
  • Plant Proteins / genetics*
  • Plant Proteins / metabolism
  • Promoter Regions, Genetic / genetics
  • RNA, Messenger / genetics
  • RNA, Messenger / metabolism

Substances

  • Basic Helix-Loop-Helix Transcription Factors
  • DNA, Bacterial
  • MicroRNAs
  • Plant Proteins
  • RNA, Messenger
  • T-DNA