Suppressor mutations in Rpf2-Rrs1 or Rpl5 bypass the Cgr1 function for pre-ribosomal 5S RNP-rotation

Nat Commun. 2018 Oct 5;9(1):4094. doi: 10.1038/s41467-018-06660-w.

Abstract

During eukaryotic 60S biogenesis, the 5S RNP requires a large rotational movement to achieve its mature position. Cryo-EM of the Rix1-Rea1 pre-60S particle has revealed the post-rotation stage, in which a gently undulating α-helix corresponding to Cgr1 becomes wedged between Rsa4 and the relocated 5S RNP, but the purpose of this insertion was unknown. Here, we show that cgr1 deletion in yeast causes a slow-growth phenotype and reversion of the pre-60S particle to the pre-rotation stage. However, spontaneous extragenic suppressors could be isolated, which restore growth and pre-60S biogenesis in the absence of Cgr1. Whole-genome sequencing reveals that the suppressor mutations map in the Rpf2-Rrs1 module and Rpl5, which together stabilize the unrotated stage of the 5S RNP. Thus, mutations in factors stabilizing the pre-rotation stage facilitate 5S RNP relocation upon deletion of Cgr1, but Cgr1 itself could stabilize the post-rotation stage.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Nuclear Proteins / genetics*
  • Nuclear Proteins / metabolism*
  • RNA, Ribosomal, 5S / metabolism*
  • RNA-Binding Proteins / genetics*
  • Ribosomal Proteins / genetics*
  • Saccharomyces cerevisiae
  • Saccharomyces cerevisiae Proteins / genetics*
  • Saccharomyces cerevisiae Proteins / metabolism*
  • Suppression, Genetic

Substances

  • CGR1 protein, S cerevisiae
  • Nuclear Proteins
  • RNA, Ribosomal, 5S
  • RNA-Binding Proteins
  • RPF2 protein, S cerevisiae
  • RPL5 protein, S cerevisiae
  • RRS1 protein, S cerevisiae
  • Ribosomal Proteins
  • Saccharomyces cerevisiae Proteins