Transition between fermentation and respiration determines history-dependent behavior in fluctuating carbon sources

Elife. 2018 Oct 9:7:e39234. doi: 10.7554/eLife.39234.

Abstract

Cells constantly adapt to environmental fluctuations. These physiological changes require time and therefore cause a lag phase during which the cells do not function optimally. Interestingly, past exposure to an environmental condition can shorten the time needed to adapt when the condition re-occurs, even in daughter cells that never directly encountered the initial condition. Here, we use the molecular toolbox of Saccharomyces cerevisiae to systematically unravel the molecular mechanism underlying such history-dependent behavior in transitions between glucose and maltose. In contrast to previous hypotheses, the behavior does not depend on persistence of proteins involved in metabolism of a specific sugar. Instead, presence of glucose induces a gradual decline in the cells' ability to activate respiration, which is needed to metabolize alternative carbon sources. These results reveal how trans-generational transitions in central carbon metabolism generate history-dependent behavior in yeast, and provide a mechanistic framework for similar phenomena in other cell types.

Keywords: S. cerevisiae; cellular memory; computational biology; gene regulation; glucose repression; infectious disease; lag phase; metabolic shift; microbiology; single-cell analysis; systems biology.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aerobiosis / drug effects
  • Carbohydrates / pharmacology
  • Carbon / pharmacology*
  • Cell Count
  • Cell Nucleus / drug effects
  • Cell Nucleus / metabolism
  • Fermentation* / drug effects
  • Gene Expression Profiling
  • Gene Expression Regulation, Fungal / drug effects
  • Gene Regulatory Networks / drug effects
  • Genes, Fungal
  • Mutation / genetics
  • Oxygen Consumption / drug effects
  • RNA, Messenger / genetics
  • RNA, Messenger / metabolism
  • Saccharomyces cerevisiae / drug effects
  • Saccharomyces cerevisiae / genetics
  • Saccharomyces cerevisiae / growth & development
  • Saccharomyces cerevisiae / metabolism*
  • Saccharomyces cerevisiae Proteins / genetics
  • Saccharomyces cerevisiae Proteins / metabolism
  • Time Factors

Substances

  • Carbohydrates
  • RNA, Messenger
  • Saccharomyces cerevisiae Proteins
  • Carbon