A case of early-onset epileptic encephalopathy with a homozygous TBC1D24 variant caused by uniparental isodisomy

Am J Med Genet A. 2019 Apr;179(4):645-649. doi: 10.1002/ajmg.a.61056. Epub 2019 Jan 24.

Abstract

TBC1D24-related disorders are rare neurodevelopmental disorders that show a broad range of neuropsychiatric deficits and are mostly inherited in an autosomal recessive manner. Here we describe a case with early-onset epileptic encephalopathy, in whom exome sequencing detected a novel pathogenic homozygous c.442G>A, p.(Glu148Lys) variant in TBC1D24. She showed severe developmental delay, congenital sensorineural hearing loss and seizures, but the combination of a high dose phenobarbital and potassium bromide was very effective for the seizures. Sanger sequencing revealed that her mother was a heterozygous carrier of the TBC1D24 variant, but her father showed only wild-type alleles. Homozygosity mapping analysis using exome data showed loss of the heterozygosity region at 16p13.3-p13.13 encompassing TBC1D24. Genotyping analysis using rare variants within loss of the heterozygosity region indicated that the patient has a homozygous haplotype inherited from her mother, indicating maternal segmental uniparental isodisomy (UPiD). These data clearly show that exome sequencing is a powerful tool to perform comprehensive genetic analysis.

Keywords: TBC1D24; epileptic encephalopathy; exome sequencing; loss of the heterozygosity; uniparental isodisomy.

Publication types

  • Case Reports
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Exome
  • Female
  • GTPase-Activating Proteins / genetics*
  • Homozygote*
  • Humans
  • Infant
  • Mutation*
  • Prognosis
  • Spasms, Infantile / etiology*
  • Spasms, Infantile / pathology
  • Uniparental Disomy / genetics
  • Uniparental Disomy / pathology*

Substances

  • GTPase-Activating Proteins
  • TBC1D24 protein, human

Supplementary concepts

  • Infantile Epileptic-Dyskinetic Encephalopathy