Characterisation of class VI TRIM RING domains: linking RING activity to C-terminal domain identity

Life Sci Alliance. 2019 Apr 26;2(3):e201900295. doi: 10.26508/lsa.201900295. Print 2019 Jun.

Abstract

TRIM E3 ubiquitin ligases regulate multiple cellular processes, and their dysfunction is linked to disease. They are characterised by a conserved N-terminal tripartite motif comprising a RING, B-box domains, and a coiled-coil region, with C-terminal domains often mediating substrate recruitment. TRIM proteins are grouped into 11 classes based on C-terminal domain identity. Class VI TRIMs, TRIM24, TRIM33, and TRIM28, have been described as transcriptional regulators, a function linked to their C-terminal plant homeodomain and bromodomain, and independent of their ubiquitination activity. It is unclear whether E3 ligase activity is regulated in family members where the C-terminal domains function independently. Here, we provide a detailed biochemical characterisation of the RING domains of class VI TRIMs and describe the solution structure of the TRIM28 RING. Our study reveals a lack of activity of the isolated RING domains, which may be linked to the absence of self-association. We propose that class VI TRIMs exist in an inactive state and require additional regulatory events to stimulate E3 ligase activity, ensuring that associated chromatin-remodelling factors are not injudiciously degraded.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Catalysis
  • Magnetic Resonance Spectroscopy
  • Models, Molecular
  • Protein Binding
  • Protein Conformation
  • Protein Domains
  • Protein Interaction Domains and Motifs*
  • Protein Multimerization
  • Structure-Activity Relationship
  • Tripartite Motif Proteins / chemistry*
  • Tripartite Motif Proteins / metabolism*
  • Tripartite Motif-Containing Protein 28 / chemistry
  • Tripartite Motif-Containing Protein 28 / metabolism
  • Ubiquitin-Conjugating Enzymes / chemistry
  • Ubiquitin-Conjugating Enzymes / metabolism

Substances

  • Tripartite Motif Proteins
  • Ubiquitin-Conjugating Enzymes
  • Tripartite Motif-Containing Protein 28

Associated data

  • PDB/6I9H