Reproducibility of positive results for rare pathogens on the FilmArray GI Panel

Diagn Microbiol Infect Dis. 2019 Sep;95(1):10-14. doi: 10.1016/j.diagmicrobio.2019.03.013. Epub 2019 Mar 29.

Abstract

Though the FilmArray GI Panel has a reported aggregate specificity and reproducibility of >97% and > 99%, respectively, the reproducibility is less understood in clinical practice. We measured the reproducibility of positive results for low-prevalence pathogens. Samples with positive results for selected targets were repeated using a different FilmArray module. Overall, 331 of 373 (89%) results were reproducible. Giardia lamblia (57/57, 100%), Cryptosporidium spp. (61/63, 97%), Cyclospora cayetanensis (34/35, 97%), Plesiomonas shigelloides (17/18, 94%), and Rotavirus A (76/77, 99%) were highly reproducible, while Adenovirus F40/41 (38/54, 70%), Vibrio spp. (8/10, 80%), V. cholerae (3/8, 37.5%), and Yersinia enterocolitica (36/50, 72%) were poorly reproducible. Review of 38 patients with nonreproducible results showed that 19 (50%) had evidence of gastroenteritis and only 6 (16%) had possible infection with the organism that showed a nonreproducible result. Higher false-positive rates with certain targets on FAGP emphasize the need for diagnostic stewardship.

Keywords: Diagnostic stewardship; FilmArray GI Panel; Molecular diagnostics; Reproducibility.

Publication types

  • Validation Study

MeSH terms

  • Adolescent
  • Adult
  • Aged
  • Aged, 80 and over
  • Animals
  • Bacteria / genetics
  • Bacteria / isolation & purification
  • Child
  • Child, Preschool
  • False Positive Reactions
  • Feces / microbiology
  • Feces / parasitology
  • Feces / virology
  • Female
  • Fungi / genetics
  • Fungi / isolation & purification
  • Gastroenteritis / diagnosis*
  • Gastroenteritis / microbiology
  • Gastroenteritis / parasitology
  • Gastroenteritis / virology
  • Humans
  • Infant
  • Male
  • Middle Aged
  • Molecular Diagnostic Techniques / methods*
  • Multiplex Polymerase Chain Reaction / standards
  • Parasites / genetics
  • Parasites / isolation & purification
  • Reproducibility of Results
  • Sensitivity and Specificity
  • Young Adult