An ultrasensitive and simple assay for the Hepatitis C virus using a reduced graphene oxide-assisted hybridization chain reaction

Analyst. 2019 Jul 7;144(13):3972-3979. doi: 10.1039/c9an00179d. Epub 2019 May 29.

Abstract

Hepatitis C virus (HCV) is a major cause of chronic liver disease, which affects 2-3% of the world population. Until now, the early detection of HCV has been a great challenge, especially for those who live in developing countries. In this study, we developed a novel and ultrasensitive assay for the detection of HCV RNA based on the reduced graphene oxide nanosheets (rGONS) and hybridization chain reaction (HCR) amplification technique. This detection system contains a pair of single fluorophore-labeled hairpin probes that can freely exist in the solution in the absence of target RNA. The introduction of target RNA can robustly trigger a HCR with the two probes and produce long nanowires containing a double-stranded structure. The weak adsorption to rGONS makes the long nanowires emit a strong fluorescence. Using this enzyme-free amplification strategy, we developed a new method for the HCV RNA assay with a detection limit of 10 fM, which is far more sensitive than the common GO-based fluorescence method. Furthermore, the new method exhibits high selectivity for the discrimination of perfectly complementary and mismatched sequences. Finally, the new method was successfully used as a HCV RNA assay in biological samples with a strong anti-interference capability in complicated environments. In summary, these remarkable characteristics of the new method highlight its potential use in a clinical sample primary screening.

MeSH terms

  • Biological Assay / methods*
  • Biosensing Techniques / methods*
  • Cell Line, Tumor
  • DNA / chemistry
  • DNA / genetics
  • DNA Probes / chemistry
  • DNA Probes / genetics
  • Fluoresceins / chemistry
  • Fluorescence
  • Fluorescent Dyes / chemistry
  • Graphite / chemical synthesis
  • Graphite / chemistry*
  • HEK293 Cells
  • Hepacivirus / isolation & purification*
  • Humans
  • Limit of Detection
  • Nucleic Acid Amplification Techniques / methods
  • Nucleic Acid Hybridization
  • Oxidation-Reduction
  • Proof of Concept Study
  • RNA, Viral / analysis*
  • RNA, Viral / genetics
  • Spectrometry, Fluorescence / methods

Substances

  • DNA Probes
  • Fluoresceins
  • Fluorescent Dyes
  • RNA, Viral
  • graphene oxide
  • Graphite
  • DNA