Shear stress regulation of miR-93 and miR-484 maturation through nucleolin

Proc Natl Acad Sci U S A. 2019 Jun 25;116(26):12974-12979. doi: 10.1073/pnas.1902844116. Epub 2019 Jun 10.

Abstract

Pulsatile shear (PS) and oscillatory shear (OS) elicit distinct mechanotransduction signals that maintain endothelial homeostasis or induce endothelial dysfunction, respectively. A subset of microRNAs (miRs) in vascular endothelial cells (ECs) are differentially regulated by PS and OS, but the regulation of the miR processing and its implications in EC biology by shear stress are poorly understood. From a systematic in silico analysis for RNA binding proteins that regulate miR processing, we found that nucleolin (NCL) is a major regulator of miR processing in response to OS and essential for the maturation of miR-93 and miR-484 that target mRNAs encoding Krüppel-like factor 2 (KLF2) and endothelial nitric oxide synthase (eNOS). Additionally, anti-miR-93 and anti-miR-484 restore KLF2 and eNOS expression and NO bioavailability in ECs under OS. Analysis of posttranslational modifications of NCL identified that serine 328 (S328) phosphorylation by AMP-activated protein kinase (AMPK) was a major PS-activated event. AMPK phosphorylation of NCL sequesters it in the nucleus, thereby inhibiting miR-93 and miR-484 processing and their subsequent targeting of KLF2 and eNOS mRNA. Elevated levels of miR-93 and miR-484 were found in sera collected from individuals afflicted with coronary artery disease in two cohorts. These findings provide translational relevance of the AMPK-NCL-miR-93/miR-484 axis in miRNA processing in EC health and coronary artery disease.

Keywords: AMPK; endothelial cells; miRNA; nucleolin; shear stress.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • AMP-Activated Protein Kinases / genetics
  • AMP-Activated Protein Kinases / metabolism
  • Adult
  • Aged
  • Animals
  • Case-Control Studies
  • Cells, Cultured
  • Computational Biology
  • Coronary Artery Disease / blood
  • Coronary Artery Disease / genetics*
  • Coronary Artery Disease / pathology
  • Endothelial Cells / pathology
  • Endothelium, Vascular / cytology
  • Endothelium, Vascular / pathology
  • Female
  • Gene Knockdown Techniques
  • Humans
  • Kruppel-Like Transcription Factors / genetics
  • Male
  • Mechanotransduction, Cellular / genetics*
  • Mice
  • MicroRNAs / antagonists & inhibitors
  • MicroRNAs / blood
  • MicroRNAs / metabolism*
  • Middle Aged
  • Nitric Oxide Synthase Type III / genetics
  • Nucleolin
  • Phosphoproteins / metabolism*
  • Phosphorylation
  • Protein Processing, Post-Translational
  • RNA Processing, Post-Transcriptional
  • RNA-Binding Proteins / metabolism*
  • Serine / metabolism
  • Stress, Mechanical

Substances

  • KLF2 protein, human
  • Kruppel-Like Transcription Factors
  • MIRN484 microRNA, human
  • MIRN93 microRNA, human
  • MicroRNAs
  • Phosphoproteins
  • RNA-Binding Proteins
  • Serine
  • NOS3 protein, human
  • Nitric Oxide Synthase Type III
  • AMP-Activated Protein Kinases