Improving the catalytic efficiency of aldo-keto reductase KmAKR towards t-butyl 6-cyano-(3R,5R)-dihydroxyhexanoate via semi-rational design

Bioorg Chem. 2019 Sep:90:103018. doi: 10.1016/j.bioorg.2019.103018. Epub 2019 Jun 8.

Abstract

t-Butyl 6-cyano-(3R,5R)-dihydroxyhexanoate ((3R,5R)-2) is an important chiral diol synthon of atorvastatin calcium. Previously, we constructed a variant KmAKR-W297H (M1) of Kluyveromyces marxianus aldo-keto reductase (KmAKR, designated as M0), possessing excellent diastereoselectivity but moderate activity towards t-butyl 6-cyano-(5R)-hydroxy-3-oxohexanoate ((5R)-1). In this work, KmAKR-W297H/Y296W/K29H (M3) was developed via semi-rational design. It exhibited much improved catalytic efficiency towards (5R)-1. The Km values of M3 for NADPH and (5R)-1 were 0.15 mmol/L and 1.41 mmol/L, and the maximal reaction rate vmax was 55.56 μmol/min/mg. Compared with M1, the catalytic efficiency kcat/Km of M3 was increased 2.64-fold. Coupled with Exiguobacterium sibiricum glucose dehydrogenase (EsGDH) for nicotinamide adenine dinucleotide phosphate (NADPH) regeneration, M3 took 3.5 h to completely reduce (5R)-1 at up to 100.0 g/L, producing 237.4 mmol/L (3R,5R)-2 in d.e.P value above 99.5%. The space-time yield (STY) of M3-catalyzed (3R,5R)-2 synthesis was 372.8 g/L/d.

Keywords: Aldo-keto reductase; Asymmetric bio-reduction; Semi-rational design; t-Butyl 6-cyano-(3R,5R)-dihydroxyhexanoate.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aldo-Keto Reductases / chemistry*
  • Aldo-Keto Reductases / genetics
  • Aldo-Keto Reductases / metabolism
  • Amino Acid Sequence
  • Bacillales / enzymology
  • Bacterial Proteins / chemistry
  • Biocatalysis
  • Caproates / chemistry*
  • Caproates / metabolism
  • Catalytic Domain
  • Exiguobacterium
  • Fungal Proteins / chemistry*
  • Fungal Proteins / genetics
  • Fungal Proteins / metabolism
  • Glucose 1-Dehydrogenase / chemistry
  • Kinetics
  • Kluyveromyces / enzymology
  • Molecular Docking Simulation
  • Mutation
  • Protein Binding
  • Protein Engineering

Substances

  • Bacterial Proteins
  • Caproates
  • Fungal Proteins
  • tert-butyl 6-cyanodihydroxyhexanoate
  • Aldo-Keto Reductases
  • Glucose 1-Dehydrogenase

Supplementary concepts

  • Exiguobacterium sibiricum