Multiplexed expansion microscopy of the brain through fluorophore screening

Methods. 2020 Mar 1:174:3-10. doi: 10.1016/j.ymeth.2019.07.017. Epub 2019 Jul 19.

Abstract

Super-resolution microscopy techniques have been widely adopted in biological sciences. Recently, a new super-resolution microscopy technique, called expansion microscopy (ExM) has been developed. In this technique, biomolecules inside specimens are first labeled with fluorophores, followed by in-situ hydrogel synthesis and physical expansion of the specimens. Image quality, including brightness and signal-to-noise ratio, depends on the extent to which fluorophores have bleached during the in-situ hydrogel synthesis process. In this work, we compared the fluorescence signal brightness of more than 20 fluorophores, after expansion, to identify the best fluorophore set for 4-color expansion microscopy imaging. In addition, we achieved 5-color multiplexed expansion microscopy by photo-bleaching one of the four fluorophores and re-staining thereafter.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Antibodies
  • Brain / diagnostic imaging*
  • Cell Line
  • Cells, Cultured
  • Color
  • Fluorescent Dyes / chemistry*
  • Hydrogels / chemical synthesis
  • Hydrogels / chemistry*
  • Immunohistochemistry
  • Luminescent Proteins
  • Mice
  • Microscopy, Confocal
  • Microscopy, Fluorescence / methods*
  • Photobleaching
  • Signal-To-Noise Ratio
  • Staining and Labeling / methods

Substances

  • Antibodies
  • Fluorescent Dyes
  • Hydrogels
  • Luminescent Proteins