OSkirc: a web tool for identifying prognostic biomarkers in kidney renal clear cell carcinoma

Future Oncol. 2019 Sep;15(27):3103-3110. doi: 10.2217/fon-2019-0296. Epub 2019 Aug 1.

Abstract

Aim: To develop a free and quick analysis online tool that allows users to easily investigate the prognostic potencies of interesting genes in kidney renal clear cell carcinoma (KIRC). Patients & methods: A total of 629 KIRC cases with gene expression profiling data and clinical follow-up information are collected from public Gene Expression Omnibus and The Cancer Genome Atlas databases. Results: One web application called Online consensus Survival analysis for KIRC (OSkirc) that can be used for exploring the prognostic implications of interesting genes in KIRC was constructed. By OSkirc, users could simply input the gene symbol to receive the Kaplan-Meier survival plot with hazard ratio and log-rank p-value. Conclusion: OSkirc is extremely valuable for basic and translational researchers to screen and validate the prognostic potencies of genes for KIRC, publicly accessible at http://bioinfo.henu.edu.cn/KIRC/KIRCList.jsp.

Keywords: GEO; KIRC; OSkirc; RCC; TCGA; database; mRNA; prognostic biomarker; survival analysis; web tool.

MeSH terms

  • Aged
  • Biomarkers, Tumor*
  • Carcinoma, Renal Cell / diagnosis*
  • Carcinoma, Renal Cell / mortality*
  • Female
  • Gene Expression Profiling
  • Gene Expression Regulation, Neoplastic
  • Humans
  • Kidney Neoplasms / diagnosis*
  • Kidney Neoplasms / mortality*
  • Male
  • Middle Aged
  • Neoplasm Staging
  • Prognosis
  • Reproducibility of Results
  • Software*
  • Transcriptome
  • Web Browser*

Substances

  • Biomarkers, Tumor